Variant report

Variant	rs36234213
Chromosome Location	chr11:17499617-17499618
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17703233	0.82[AFR][1000 genomes]
rs72868439	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17498400-17500400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:17498400-17501000	Weak transcription	Gastric	stomach
3	chr11:17498400-17501000	Weak transcription	Pancreas	Pancrea
4	chr11:17498800-17500600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:17498800-17502000	Enhancers	Dnd41	blood
6	chr11:17499000-17500400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:17499000-17500600	Weak transcription	Fetal Brain Female	brain
8	chr11:17499600-17499800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:17499600-17500400	Weak transcription	Brain Angular Gyrus	brain
10	chr11:17499600-17500800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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