Variant report

Variant	rs362635
Chromosome Location	chr7:103241633-103241634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10245257	0.81[CEU][hapmap]
rs123714	0.81[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap]
rs2073551	1.00[CEU][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2073557	0.82[JPT][hapmap]
rs2159677	0.89[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2191702	0.81[CEU][hapmap]
rs2249372	0.81[CEU][hapmap];0.84[GIH][hapmap]
rs2283022	0.82[JPT][hapmap]
rs2299345	0.85[ASN][1000 genomes]
rs2299356	0.82[JPT][hapmap]
rs362633	0.86[JPT][hapmap]
rs362695	0.81[CEU][hapmap]
rs3808024	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103206000-103243400	Weak transcription	K562	blood
2	chr7:103230400-103246200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:103235000-103249200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:103239400-103248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:103240600-103244800	Weak transcription	Pancreas	Pancrea
6	chr7:103241000-103241800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:103241400-103242400	Enhancers	Fetal Heart	heart
8	chr7:103241400-103245000	Strong transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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