Variant report

Variant	rs362742
Chromosome Location	chr7:103178306-103178307
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2237626	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2237627	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2535760	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2535762	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2711838	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs362707	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs362708	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs362710	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs362711	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362712	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362714	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362715	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs362717	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs362736	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs362737	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs362738	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs362739	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs362743	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4729921	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4729922	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv888923	chr7:103143117-103199719	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103158000-103198600	Weak transcription	Liver	Liver
2	chr7:103165000-103179200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:103168400-103181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:103170200-103180000	Weak transcription	K562	blood
5	chr7:103174200-103179400	Weak transcription	Brain Angular Gyrus	brain
6	chr7:103175200-103180600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:103177400-103179400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:103177800-103179400	Active TSS	Brain Anterior Caudate	brain
9	chr7:103178000-103178400	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:103178000-103178800	Active TSS	Brain Cingulate Gyrus	brain
11	chr7:103178000-103178800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:103178000-103179200	Weak transcription	HepG2	liver
13	chr7:103178200-103178800	Enhancers	Brain Substantia Nigra	brain
14	chr7:103178200-103191400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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