Variant report

Variant	rs362826
Chromosome Location	chr6:146755566-146755567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2300632	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3025920	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs362828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7772678	1.00[ASN][1000 genomes]
rs7773348	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146754800-146755600	Enhancers	Fetal Brain Male	brain
2	chr6:146754800-146756200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:146754800-146756400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:146755000-146755800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:146755000-146756000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:146755000-146756000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:146755000-146756000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:146755000-146756000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:146755000-146756200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
10	chr6:146755000-146756200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:146755000-146756200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:146755000-146756200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:146755000-146756200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr6:146755000-146756200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr6:146755000-146756200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:146755200-146755600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:146755200-146755600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:146755200-146755600	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr6:146755200-146755600	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr6:146755200-146755600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
21	chr6:146755200-146755600	Active TSS	NH-A	brain
22	chr6:146755200-146755800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:146755200-146755800	Active TSS	Brain Cingulate Gyrus	brain
24	chr6:146755200-146755800	Bivalent/Poised TSS	Fetal Stomach	stomach
25	chr6:146755200-146756000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:146755200-146756000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
27	chr6:146755200-146756000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
28	chr6:146755200-146756000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:146755200-146756000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:146755200-146756000	Active TSS	Brain Substantia Nigra	brain
31	chr6:146755200-146756000	Active TSS	Placenta Amnion	Placenta Amnion
32	chr6:146755200-146756000	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr6:146755200-146756000	Active TSS	Right Ventricle	heart
34	chr6:146755200-146756000	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr6:146755200-146756200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:146755200-146756200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:146755200-146756200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:146755200-146756200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr6:146755200-146756200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:146755200-146756200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:146755200-146756200	Active TSS	Brain Hippocampus Middle	brain
42	chr6:146755200-146756200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
43	chr6:146755200-146756200	Active TSS	Fetal Brain Female	brain
44	chr6:146755200-146756200	Flanking Active TSS	Fetal Muscle Leg	muscle
45	chr6:146755200-146756200	Active TSS	Rectal Smooth Muscle	rectum
46	chr6:146755200-146756400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr6:146755200-146756400	Enhancers	Spleen	Spleen
48	chr6:146755200-146756400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
49	chr6:146755200-146756600	Enhancers	Fetal Heart	heart
50	chr6:146755400-146755600	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung

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