Variant report

Variant	rs36285
Chromosome Location	chr3:142694463-142694464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:142685155..142687473-chr3:142694018..142697111,4	K562	blood:
2	chr3:142687733..142690904-chr3:142694108..142697012,4	K562	blood:
3	chr3:142687639..142690486-chr3:142692515..142696128,4	K562	blood:
4	chr3:142692398..142697011-chr3:142719023..142723463,5	MCF-7	breast:
5	chr3:142297588..142299438-chr3:142694244..142697127,2	K562	blood:
6	chr3:142694373..142698058-chr3:142700090..142703022,3	K562	blood:
7	chr3:142677692..142680689-chr3:142694099..142696249,3	K562	blood:
8	chr3:142680815..142687473-chr3:142694018..142698711,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175054	Chromatin interaction
ENSG00000268129	Chromatin interaction
ENSG00000163714	Chromatin interaction
ENSG00000188582	Chromatin interaction
ENSG00000241570	Chromatin interaction
ENSG00000241592	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10790	0.82[CEU][hapmap]
rs185182	0.93[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2290549	0.82[CEU][hapmap]
rs251484	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs251485	0.89[EUR][1000 genomes]
rs251486	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs251487	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs251489	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs251490	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs251491	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs251492	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3101060	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs36284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40160	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs42381	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs668856	0.87[ASN][1000 genomes]
rs7652745	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv877563	chr3:142661350-142743889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36285	SR140	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142691200-142695200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:142691400-142695600	Weak transcription	Right Atrium	heart
3	chr3:142691800-142695200	Enhancers	A549	lung
4	chr3:142692600-142694800	Enhancers	K562	blood
5	chr3:142692600-142695200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:142692600-142696400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:142692800-142695400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:142693400-142694600	Enhancers	Left Ventricle	heart
9	chr3:142693600-142695400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:142693600-142695400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:142693600-142695600	Weak transcription	Psoas Muscle	Psoas
12	chr3:142693800-142695200	Weak transcription	Fetal Heart	heart
13	chr3:142694000-142694800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:142694000-142695600	Weak transcription	HSMMtube	muscle
15	chr3:142694200-142695400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:142694200-142696400	Enhancers	Hela-S3	cervix
17	chr3:142694200-142699800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr3:142694400-142694600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:142694400-142694600	Enhancers	Spleen	Spleen
20	chr3:142694400-142694800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:142694400-142695400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:142694400-142695800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:142694400-142696400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:142694400-142696400	Enhancers	HepG2	liver

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