Variant report

Variant	rs362862
Chromosome Location	chr6:146661268-146661269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:146660977-146661482	SK-N-SH	brain:	n/a	n/a
2	FOS	chr6:146660947-146661352	MCF10A-Er-Src	breast:	n/a	chr6:146661177-146661189 chr6:146661179-146661186 chr6:146661179-146661187 chr6:146661203-146661212 chr6:146661179-146661187
3	CEBPB	chr6:146661036-146661315	Hela-S3	cervix:	n/a	n/a
4	JUND	chr6:146661013-146661372	Hela-S3	cervix:	n/a	chr6:146661177-146661189 chr6:146661179-146661186 chr6:146661179-146661187 chr6:146661203-146661212 chr6:146661179-146661187
5	FOS	chr6:146661026-146661346	MCF10A-Er-Src	breast:	n/a	chr6:146661177-146661189 chr6:146661179-146661186 chr6:146661179-146661187 chr6:146661203-146661212 chr6:146661179-146661187
6	MAFK	chr6:146661059-146661344	K562	blood:	n/a	chr6:146661179-146661189 chr6:146661178-146661193 chr6:146661180-146661189
7	MAFK	chr6:146661137-146661317	HepG2	liver:	n/a	chr6:146661179-146661189 chr6:146661178-146661193 chr6:146661180-146661189
8	JUN	chr6:146661201-146661401	K562	blood:	n/a	chr6:146661203-146661212
9	KAP1	chr6:146660828-146661339	U2OS	brain:	n/a	n/a
10	EP300	chr6:146661043-146661285	Hela-S3	cervix:	n/a	chr6:146661179-146661188
11	FOS	chr6:146661025-146661352	MCF10A-Er-Src	breast:	n/a	chr6:146661177-146661189 chr6:146661179-146661186 chr6:146661179-146661187 chr6:146661203-146661212 chr6:146661179-146661187
12	MAFF	chr6:146661018-146661320	K562	blood:	n/a	n/a
13	FOXA2	chr6:146660886-146661355	A549	lung:	n/a	n/a
14	MAFK	chr6:146660976-146661269	Hela-S3	cervix:	n/a	chr6:146661179-146661189 chr6:146661178-146661193 chr6:146661180-146661189
15	BACH1	chr6:146661018-146661269	H1-hESC	embryonic stem cell:	n/a	chr6:146661176-146661190
16	USF2	chr6:146660932-146661320	Hela-S3	cervix:	n/a	n/a
17	RFX5	chr6:146660888-146661388	Hela-S3	cervix:	n/a	n/a
18	MAFK	chr6:146661031-146661273	H1-hESC	embryonic stem cell:	n/a	chr6:146661179-146661189 chr6:146661178-146661193 chr6:146661180-146661189
19	TCF12	chr6:146660899-146661479	SK-N-SH	brain:	n/a	n/a
20	FOS	chr6:146661002-146661352	MCF10A-Er-Src	breast:	n/a	chr6:146661177-146661189 chr6:146661179-146661186 chr6:146661179-146661187 chr6:146661203-146661212 chr6:146661179-146661187
21	RCOR1	chr6:146660944-146661293	Hela-S3	cervix:	n/a	n/a
22	SMC3	chr6:146660822-146661290	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
RNA5SP222	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs362864	1.00[ASN][1000 genomes]
rs4502955	1.00[CHB][hapmap]
rs7760995	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146657000-146661600	Enhancers	HUVEC	blood vessel
2	chr6:146659600-146661400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:146660000-146661600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:146660800-146661400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:146660800-146661400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:146660800-146661600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:146660800-146661600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:146660800-146661600	Enhancers	Brain Hippocampus Middle	brain
9	chr6:146660800-146661600	Flanking Active TSS	Hela-S3	cervix
10	chr6:146660800-146661600	Enhancers	NH-A	brain
11	chr6:146661000-146661400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:146661000-146661400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:146661000-146661400	Flanking Active TSS	A549	lung
14	chr6:146661000-146661600	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr6:146661200-146661400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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