Variant report

Variant	rs36294
Chromosome Location	chr3:142677280-142677281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs251495	0.89[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs36287	0.89[CEU][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs36292	1.00[CEU][hapmap];0.90[GIH][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36293	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv877563	chr3:142661350-142743889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36294	ZIC4	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142667200-142681000	Weak transcription	Right Ventricle	heart
2	chr3:142669200-142680800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:142674200-142680200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:142675200-142680000	Enhancers	HepG2	liver
5	chr3:142676200-142681600	Weak transcription	Psoas Muscle	Psoas
6	chr3:142676600-142678600	Enhancers	HMEC	breast
7	chr3:142676800-142678800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:142676800-142679400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:142677000-142677400	Weak transcription	K562	blood
10	chr3:142677000-142677600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:142677000-142677600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr3:142677000-142677600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr3:142677000-142677800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:142677000-142678000	Enhancers	NH-A	brain
15	chr3:142677000-142678400	Weak transcription	Left Ventricle	heart
16	chr3:142677000-142678600	Enhancers	NHEK	skin
17	chr3:142677200-142677400	Enhancers	A549	lung
18	chr3:142677200-142678600	Enhancers	Hela-S3	cervix
19	chr3:142677200-142679400	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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