Variant report

Variant	rs363146
Chromosome Location	chr4:3160477-3160478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:3112733..3115394-chr4:3157286..3160905,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2798232	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2798236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs362313	0.86[ASW][hapmap];0.86[LWK][hapmap]
rs363134	0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs887031	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
5	nsv461164	chr4:3149016-3215835	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv593439	chr4:3149016-3215835	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3088200-3164200	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr4:3097200-3162200	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:3097400-3163800	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:3098000-3162600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:3108600-3163000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr4:3108800-3164600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:3114600-3292400	Weak transcription	Right Atrium	heart
8	chr4:3114800-3162800	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:3115800-3161600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:3115800-3162800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:3125200-3163000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:3125200-3163200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:3126800-3164400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:3127000-3164400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:3127200-3163400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:3127200-3163400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:3127200-3163400	Strong transcription	Fetal Muscle Trunk	muscle
18	chr4:3127200-3163600	Strong transcription	Fetal Intestine Large	intestine
19	chr4:3127200-3164200	Strong transcription	Fetal Muscle Leg	muscle
20	chr4:3127200-3164400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr4:3131200-3162600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:3134800-3162000	Weak transcription	Hela-S3	cervix
23	chr4:3137800-3163400	Strong transcription	Liver	Liver
24	chr4:3139600-3164800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr4:3144200-3161800	Strong transcription	GM12878-XiMat	blood
26	chr4:3145600-3164600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr4:3145800-3164000	Strong transcription	Adipose Nuclei	Adipose
28	chr4:3145800-3239200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr4:3146000-3163400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:3146000-3163600	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:3146200-3162600	Strong transcription	Brain Hippocampus Middle	brain
32	chr4:3146200-3163400	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:3146200-3164400	Strong transcription	Fetal Thymus	thymus
34	chr4:3146400-3162200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:3146400-3162400	Strong transcription	Stomach Smooth Muscle	stomach
36	chr4:3146400-3163400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:3146400-3163400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr4:3146400-3163600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:3146400-3163800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr4:3146400-3164400	Strong transcription	Primary T cells from cord blood	blood
41	chr4:3146400-3164800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:3146600-3163600	Strong transcription	Placenta	Placenta
43	chr4:3146600-3164000	Strong transcription	Primary B cells from cord blood	blood
44	chr4:3146600-3164200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:3146600-3164800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:3147000-3164400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:3147200-3164000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:3147800-3164600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:3148000-3162200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr4:3148000-3163000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links