Variant report

Variant	rs364897
Chromosome Location	chr1:155208006-155208007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155196524..155199471-chr1:155205933..155208728,2	MCF-7	breast:
2	chr1:155207800..155212678-chr1:155214121..155217855,6	K562	blood:

Variant related genes	Relation type
ENSG00000177628	Chromatin interaction
ENSG00000160766	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10157801	0.92[CHB][hapmap]
rs10908458	0.93[CHB][hapmap]
rs11264337	0.92[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs11264338	0.92[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs11264339	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12025371	0.93[CHB][hapmap]
rs12028043	0.92[CHB][hapmap]
rs12904	0.92[CHB][hapmap]
rs16836748	1.00[AFR][1000 genomes]
rs2066981	0.80[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2075571	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3814316	1.00[JPT][hapmap]
rs4072037	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs41264921	1.00[AFR][1000 genomes]
rs4246529	0.92[CHB][hapmap]
rs4276913	0.92[CHB][hapmap]
rs4421576	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4460629	0.92[CHB][hapmap];0.92[YRI][hapmap]
rs4745	0.92[CHB][hapmap]
rs4971052	0.82[CHB][hapmap]
rs4971059	1.00[JPT][hapmap]
rs4971076	0.86[CHB][hapmap]
rs4971079	0.92[CHB][hapmap];0.92[YRI][hapmap]
rs4971085	0.93[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap]
rs4971088	0.93[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs4971100	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7364524	0.86[CHB][hapmap]
rs7556304	0.92[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs914615	0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9297	0.92[CHB][hapmap]
rs9426886	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
3	nsv831614	chr1:155094978-155275031	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	434 gene(s)	inside rSNPs	diseases
4	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
5	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
6	nsv470741	chr1:155115260-155230131	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
7	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
8	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
9	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
10	nsv870053	chr1:155180349-155212316	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	esv13606	chr1:155180489-155221243	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
12	nsv1008748	chr1:155189148-155230610	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
13	nsv1011773	chr1:155189148-155234821	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
14	esv1793876	chr1:155194112-155212255	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	75 gene(s)	inside rSNPs	diseases
15	nsv8480	chr1:155206335-155214536	Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
16	nsv947198	chr1:155206997-155226440	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155197200-155212800	Weak transcription	Small Intestine	intestine
2	chr1:155198000-155209600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:155198000-155210400	Weak transcription	A549	lung
4	chr1:155198000-155210400	Weak transcription	HMEC	breast
5	chr1:155198000-155210400	Weak transcription	HSMM	muscle
6	chr1:155198000-155210600	Weak transcription	Psoas Muscle	Psoas
7	chr1:155198000-155210800	Weak transcription	Fetal Kidney	kidney
8	chr1:155198200-155209600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:155198200-155209600	Weak transcription	Fetal Brain Male	brain
10	chr1:155198200-155210400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:155198200-155210400	Weak transcription	Stomach Mucosa	stomach
12	chr1:155198200-155210400	Weak transcription	NHEK	skin
13	chr1:155198200-155210800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:155198200-155210800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:155201200-155210400	Weak transcription	HepG2	liver
16	chr1:155201400-155210400	Weak transcription	K562	blood
17	chr1:155201400-155210600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr1:155201800-155210400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:155202200-155210400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:155202600-155210400	Weak transcription	Right Atrium	heart
21	chr1:155202800-155210200	Weak transcription	Fetal Lung	lung
22	chr1:155203800-155210400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:155204600-155209400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:155204600-155209400	Strong transcription	Spleen	Spleen
25	chr1:155204600-155209600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:155204600-155209600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:155204600-155209800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:155204600-155210000	Strong transcription	Fetal Intestine Small	intestine
29	chr1:155204800-155208200	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:155204800-155208200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:155204800-155209800	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr1:155205000-155208200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:155205000-155209000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr1:155205000-155209400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:155205000-155209600	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr1:155205000-155209800	Strong transcription	Adipose Nuclei	Adipose
37	chr1:155205000-155209800	Strong transcription	Thymus	Thymus
38	chr1:155205200-155208200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr1:155205200-155208200	Strong transcription	Lung	lung
40	chr1:155205200-155208800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr1:155205200-155209400	Strong transcription	Fetal Thymus	thymus
42	chr1:155205400-155208200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:155205400-155208200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr1:155205400-155208200	Strong transcription	Pancreas	Pancrea
45	chr1:155205400-155208800	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr1:155205400-155209200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:155205400-155209600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:155205400-155209800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:155205400-155210000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr1:155205600-155208400	Strong transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links