Variant report

Variant	rs36652
Chromosome Location	chr5:36723323-36723324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36722920..36725168-chr5:36726179..36730650,3	MCF-7	breast:
2	chr5:36722181..36727364-chr5:36874838..36878996,5	MCF-7	breast:
3	chr5:36721531..36723917-chr5:36727097..36729088,2	K562	blood:

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs36651	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs42914	0.85[CEU][hapmap];0.88[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36700200-36724200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:36705800-36724600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:36720200-36724200	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:36721000-36724800	Flanking Active TSS	GM12878-XiMat	blood
5	chr5:36721600-36724200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:36721800-36724000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:36721800-36724200	Enhancers	Primary hematopoietic stem cells	blood
8	chr5:36721800-36724200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:36721800-36724600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:36722000-36725800	Enhancers	Fetal Muscle Leg	muscle
11	chr5:36722400-36723600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:36722400-36723600	Enhancers	Fetal Heart	heart
13	chr5:36722400-36723800	Weak transcription	Spleen	Spleen
14	chr5:36722800-36724200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:36723000-36723400	Enhancers	Colonic Mucosa	Colon
16	chr5:36723000-36723400	Enhancers	Colon Smooth Muscle	Colon
17	chr5:36723000-36723400	Enhancers	Dnd41	blood
18	chr5:36723000-36723600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:36723000-36723800	Enhancers	Primary B cells from cord blood	blood
20	chr5:36723200-36723400	Enhancers	Primary T cells fromperipheralblood	blood
21	chr5:36723200-36723400	Enhancers	Fetal Thymus	thymus
22	chr5:36723200-36723400	Flanking Active TSS	Osteobl	bone
23	chr5:36723200-36723600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:36723200-36723800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr5:36723200-36724000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr5:36723200-36724000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr5:36723200-36724200	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr5:36723200-36724200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr5:36723200-36724200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr5:36723200-36724600	Enhancers	Duodenum Mucosa	Duodenum

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