Variant report

Variant	rs366626
Chromosome Location	chr3:191142545-191142546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:191077716..191080411-chr3:191142147..191144341,2	K562	blood:
2	chr3:191142125..191144834-chr3:191234046..191236954,2	K562	blood:
3	chr3:191046415..191047944-chr3:191142386..191144796,2	K562	blood:

Variant related genes	Relation type
ENSG00000188958	Chromatin interaction
ENSG00000152492	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10937477	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1347400	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1473866	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs150505	0.83[AFR][1000 genomes]
rs150506	0.93[ASN][1000 genomes]
rs159488	0.81[ASN][1000 genomes]
rs159489	0.93[ASN][1000 genomes]
rs186063	0.83[JPT][hapmap]
rs186066	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs186068	0.83[AFR][1000 genomes]
rs188384	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs188385	0.89[ASN][1000 genomes]
rs192671	0.82[CHB][hapmap]
rs293797	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs293798	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs293800	0.91[ASN][1000 genomes]
rs293802	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs293804	0.91[ASN][1000 genomes]
rs293805	0.87[ASN][1000 genomes]
rs293806	0.91[ASN][1000 genomes]
rs293808	0.93[ASN][1000 genomes]
rs293815	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs293844	0.93[ASN][1000 genomes]
rs293846	0.93[ASN][1000 genomes]
rs293851	0.93[ASN][1000 genomes]
rs293857	0.83[AFR][1000 genomes]
rs293861	0.83[AFR][1000 genomes]
rs297396	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs367747	0.91[ASN][1000 genomes]
rs368665	0.91[ASN][1000 genomes]
rs369174	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs373035	0.93[ASN][1000 genomes]
rs381090	0.93[ASN][1000 genomes]
rs383075	0.89[ASN][1000 genomes]
rs390744	0.93[ASN][1000 genomes]
rs401465	0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs423989	0.83[AFR][1000 genomes]
rs426466	0.93[ASN][1000 genomes]
rs432085	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs434556	0.91[ASN][1000 genomes]
rs437244	0.91[ASN][1000 genomes]
rs448133	0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs448643	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4677630	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs4677734	0.82[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs4677735	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs497918	0.83[AFR][1000 genomes]
rs523270	0.82[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs525774	0.93[ASN][1000 genomes]
rs526785	0.93[ASN][1000 genomes]
rs529523	0.93[ASN][1000 genomes]
rs566548	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6779820	0.82[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs6953	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs696347	0.83[AFR][1000 genomes]
rs696348	0.82[AFR][1000 genomes]
rs696349	0.83[AFR][1000 genomes]
rs697905	0.91[ASN][1000 genomes]
rs697913	0.81[AFR][1000 genomes]
rs709142	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931943	chr3:190860224-191321873	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2757910	chr3:190867011-191279107	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759209	chr3:190867011-191279107	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428428	chr3:190936834-191215596	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv998208	chr3:191021434-191175350	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv534269	chr3:191037181-191261730	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191141800-191142600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links