Variant report

Variant	rs366656
Chromosome Location	chr4:119634694-119634695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119626579..119629053-chr4:119632251..119635031,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10022024	0.89[YRI][hapmap]
rs1064034	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11735991	0.95[CEU][hapmap]
rs13127508	0.95[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap]
rs167246	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2200517	0.89[CEU][hapmap]
rs2288306	0.94[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap]
rs2631147	0.89[CEU][hapmap]
rs298974	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs298975	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs298983	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs298984	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs298987	0.97[EUR][1000 genomes]
rs298991	1.00[CEU][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs298992	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs298994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs298995	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs298996	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs298998	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs299005	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs368669	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs419292	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4340779	0.94[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap]
rs606665	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6822035	0.85[GIH][hapmap];0.88[TSI][hapmap]
rs6828577	0.95[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap]
rs6854328	0.94[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap]
rs7697022	0.94[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv427693	chr4:119493919-119674742	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs366656	METTL14	cis	parietal	SCAN
rs366656	METTL14	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119607000-119644800	Weak transcription	Small Intestine	intestine
2	chr4:119607200-119659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:119607800-119693800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:119608000-119645000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:119608600-119635200	Strong transcription	Fetal Thymus	thymus
6	chr4:119608600-119635800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:119608600-119674000	Weak transcription	Stomach Mucosa	stomach
8	chr4:119608800-119635000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:119609000-119634800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:119609000-119635000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:119609000-119635000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr4:119609000-119636000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:119609000-119636200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr4:119609200-119634800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:119609200-119635600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:119609200-119635600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:119609200-119635800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:119609200-119636200	Strong transcription	Adipose Nuclei	Adipose
19	chr4:119609200-119648600	Weak transcription	Fetal Heart	heart
20	chr4:119609400-119635600	Strong transcription	Dnd41	blood
21	chr4:119620000-119660200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:119621800-119634800	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:119622000-119635800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr4:119623600-119635600	Strong transcription	Primary B cells from cord blood	blood
25	chr4:119624800-119636000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:119625400-119636000	Strong transcription	Liver	Liver
27	chr4:119625800-119718000	Weak transcription	Hela-S3	cervix
28	chr4:119626600-119646000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:119626600-119648000	Weak transcription	Psoas Muscle	Psoas
30	chr4:119626800-119642200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:119626800-119644800	Weak transcription	Aorta	Aorta
32	chr4:119627200-119645000	Weak transcription	Spleen	Spleen
33	chr4:119627400-119645200	Weak transcription	Gastric	stomach
34	chr4:119627400-119645600	Weak transcription	Pancreas	Pancrea
35	chr4:119627400-119648600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr4:119627800-119642000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:119627800-119646200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:119627800-119648600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr4:119628000-119639600	Weak transcription	NHEK	skin
40	chr4:119628000-119640800	Weak transcription	Fetal Brain Male	brain
41	chr4:119628000-119646400	Weak transcription	Colon Smooth Muscle	Colon
42	chr4:119628000-119647000	Weak transcription	Brain Substantia Nigra	brain
43	chr4:119628000-119659800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr4:119628200-119641800	Weak transcription	HepG2	liver
45	chr4:119628200-119647800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr4:119628400-119657600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:119629400-119642200	Weak transcription	Lung	lung
48	chr4:119629400-119642600	Weak transcription	Fetal Intestine Small	intestine
49	chr4:119629400-119644400	Weak transcription	Ovary	ovary
50	chr4:119629600-119635000	Strong transcription	HUES6 Cell Line	embryonic stem cell

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