Variant report

Variant	rs366834
Chromosome Location	chr1:75226871-75226872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75220395..75222946-chr1:75225732..75227331,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs277372	1.00[AFR][1000 genomes]
rs277373	1.00[AFR][1000 genomes]
rs277382	1.00[AFR][1000 genomes]
rs277383	0.90[AFR][1000 genomes]
rs277399	0.90[AFR][1000 genomes]
rs277401	1.00[AFR][1000 genomes]
rs277403	1.00[AFR][1000 genomes]
rs448759	1.00[AFR][1000 genomes]
rs494565	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs520882	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs569720	1.00[AFR][1000 genomes]
rs699803	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv830259	chr1:75089177-75241062	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1851105	chr1:75152186-75302921	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75200000-75231600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:75201400-75231800	Strong transcription	Dnd41	blood
3	chr1:75202400-75231200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:75202400-75231200	Strong transcription	Adipose Nuclei	Adipose
5	chr1:75202400-75231200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr1:75202400-75231400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:75204000-75231400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:75204000-75231400	Weak transcription	Psoas Muscle	Psoas
9	chr1:75205200-75232400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr1:75206200-75232400	Weak transcription	Small Intestine	intestine
11	chr1:75206200-75232800	Weak transcription	NHLF	lung
12	chr1:75206800-75230600	Weak transcription	Pancreas	Pancrea
13	chr1:75206800-75233600	Weak transcription	Gastric	stomach
14	chr1:75207600-75233400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:75209400-75228600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr1:75210600-75229000	Weak transcription	Brain Angular Gyrus	brain
17	chr1:75211000-75232000	Weak transcription	Colonic Mucosa	Colon
18	chr1:75213400-75227600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr1:75214400-75228200	Strong transcription	Primary T cells from cord blood	blood
20	chr1:75214400-75232200	Strong transcription	Liver	Liver
21	chr1:75214600-75227000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr1:75214800-75227800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:75214800-75228200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:75214800-75228600	Strong transcription	Stomach Smooth Muscle	stomach
25	chr1:75215200-75231800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:75216000-75235200	Weak transcription	Right Ventricle	heart
27	chr1:75219200-75231000	Weak transcription	Lung	lung
28	chr1:75219200-75233400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr1:75219800-75232400	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:75219800-75232600	Weak transcription	K562	blood
31	chr1:75220000-75230600	Weak transcription	Fetal Heart	heart
32	chr1:75220000-75231000	Weak transcription	Hela-S3	cervix
33	chr1:75220200-75228000	Strong transcription	Left Ventricle	heart
34	chr1:75220800-75230800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:75221200-75229000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr1:75221400-75227200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr1:75221400-75231800	Weak transcription	NHDF-Ad	bronchial
38	chr1:75221400-75232400	Weak transcription	NHEK	skin
39	chr1:75221400-75238000	Weak transcription	A549	lung
40	chr1:75221600-75227200	Weak transcription	HSMM	muscle
41	chr1:75221600-75229600	Weak transcription	NH-A	brain
42	chr1:75221600-75229800	Weak transcription	HSMMtube	muscle
43	chr1:75221600-75234600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:75221600-75237600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr1:75221800-75227800	Strong transcription	Fetal Muscle Leg	muscle
46	chr1:75222200-75230600	Weak transcription	Brain Substantia Nigra	brain
47	chr1:75222200-75236000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr1:75222600-75230200	Strong transcription	GM12878-XiMat	blood
49	chr1:75222800-75227000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr1:75222800-75227200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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