Variant report

Variant	rs36713
Chromosome Location	chr5:127561432-127561433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs255694	1.00[ASN][1000 genomes]
rs36701	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830482	chr5:127475398-127665377	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs36713	CTC-228N24.3	cis	Skin Sun Exposed Lower leg	GTEx
rs36713	CTC-228N24.3	cis	Muscle Skeletal	GTEx
rs36713	CTC-228N24.3	cis	Thyroid	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127560400-127561800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:127560400-127561800	Enhancers	HSMM	muscle
3	chr5:127560400-127563200	Weak transcription	Osteobl	bone
4	chr5:127560600-127562800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:127560600-127563000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:127560600-127563600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:127561000-127561600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:127561000-127561800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:127561000-127561800	Enhancers	HMEC	breast
10	chr5:127561000-127564800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:127561400-127563400	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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