Variant report

Variant	rs367611803
Chromosome Location	chr7:57088851-57088852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:57088851-57088901	HPAEpiC	pulmonary alveolar:	n/a
2	chr7:57088851-57088901	HCF	heart:	n/a
3	chr7:57088851-57088901	HAEpiC	amniotic membrane:	n/a
4	chr7:57088851-57088901	HEEpiC	esophagus:	n/a
5	chr7:57088851-57088901	SK-N-MC	brain:	n/a
6	chr7:57088851-57088901	PFSK-1	brain:	n/a
7	chr7:57088851-57088901	HRPEpiC	eye:	n/a
8	chr7:57088851-57088901	AG04449	skin:	fetal
9	chr7:57088851-57088901	MCF10A-Er-Src	breast:	n/a
10	chr7:57088851-57088901	RPTEC	kidney:	n/a
11	chr7:57088851-57088901	HMEC	breast:	n/a
12	chr7:57088851-57088901	GM12892	blood:	n/a
13	chr7:57088851-57088901	HIPEpiC	eye:	n/a
14	chr7:57088851-57088901	SK-N-SH_RA	brain:	n/a
15	chr7:57088851-57088901	PANC-1	pancreas:	n/a
16	chr7:57088851-57088901	NH-A	brain:	n/a
17	chr7:57088851-57088901	BE2_C	brain:	n/a
18	chr7:57088851-57088901	AG09309	skin:	n/a
19	chr7:57088851-57088901	ECC-1	luminal epithelium:	n/a
20	chr7:57088851-57088901	HCT-116	colon:	n/a
21	chr7:57088851-57088901	NHDF-neo	bronchial:	n/a
22	chr7:57088851-57088901	ovcar-3	ovarian:	n/a
23	chr7:57088851-57088901	SKMC	muscle:	n/a
24	chr7:57088851-57088901	MCF-7	breast:	n/a
25	chr7:57088851-57088901	K562	blood:	n/a
26	chr7:57088851-57088901	NB4	blood:	n/a
27	chr7:57088851-57088901	GM12891	blood:	n/a
28	chr7:57088851-57088901	AG09319	gingival:	n/a
29	chr7:57088851-57088901	SAEC	small airway:	n/a
30	chr7:57088851-57088901	A549	lung:	n/a
31	chr7:57088851-57088901	HNPCEpiC	eye:	n/a
32	chr7:57088851-57088901	LNCaP	prostate:	n/a
33	chr7:57088851-57088901	IMR90	lung:	fetal
34	chr7:57088851-57088901	AG10803	skin:	n/a
35	chr7:57088851-57088901	HRCEpiC	kidney:	n/a
36	chr7:57088851-57088901	GM06990	blood:	n/a
37	chr7:57088851-57088901	HL-60	blood:	n/a
38	chr7:57088851-57088901	T-47D	breast:	n/a
39	chr7:57088851-57088901	HCM	heart:	n/a
40	chr7:57088851-57088901	NHBE	bronchial:	n/a
41	chr7:57088851-57088901	AoSMC	blood vessel:	n/a
42	chr7:57088851-57088901	Hela-S3	cervix:	n/a
43	chr7:57088851-57088901	CMK	blood:	n/a
44	chr7:57088851-57088901	HRE	kidney:	n/a
45	chr7:57088851-57088901	Hepatocyte	liver:	n/a
46	chr7:57088851-57088901	NT2-D1	testis:	n/a
47	chr7:57088851-57088901	Jurkat	blood:	n/a
48	chr7:57088851-57088901	HEK293	kidney:	embryo
49	chr7:57088851-57088901	AG04450	lung:	fetal
50	chr7:57088851-57088901	HCPEpiC	choroid plexus:	n/a

No data

Variant related genes	Relation type
SLC29A4P1	CpG island

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022563	chr7:56383876-57318888	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
2	nsv1020833	chr7:56511848-57323499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
3	nsv538865	chr7:56511848-57323499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
4	nsv1017561	chr7:56512618-57334136	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
5	nsv1033128	chr7:56787535-57493216	ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	esv2761073	chr7:56795488-57116749	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1016071	chr7:56807732-57116749	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1016541	chr7:56823372-57806010	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
9	nsv1031261	chr7:56949355-57601047	Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
10	nsv1029803	chr7:57007829-57601047	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
11	esv1811094	chr7:57014904-57095932	ZNF genes & repeats	TF binding region CpG island lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
12	nsv888068	chr7:57018980-57116749	ZNF genes & repeats	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv888069	chr7:57033336-57116749	ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
14	nsv1019165	chr7:57065348-57659814	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
15	nsv1032599	chr7:57065348-57667279	ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
16	esv3439553	chr7:57086510-57090308	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
17	esv3427465	chr7:57087035-57089783	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
18	esv3423286	chr7:57087085-57089808	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
19	esv3405471	chr7:57087710-57089358	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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