Variant report

Variant	rs367625277
Chromosome Location	chr3:177406355-177406356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752972	chr3:176924298-177425298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv998537	chr3:177403421-177425648	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1009087	chr3:177405231-177422275	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177392400-177418800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:177395000-177411600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:177398800-177421600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:177405200-177407000	Enhancers	Brain Hippocampus Middle	brain
5	chr3:177405400-177406800	Enhancers	Brain Anterior Caudate	brain
6	chr3:177405400-177406800	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:177405400-177406800	Enhancers	Brain Substantia Nigra	brain
8	chr3:177405600-177411400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:177405800-177406400	Enhancers	Brain Germinal Matrix	brain
10	chr3:177405800-177406600	Enhancers	Colon Smooth Muscle	Colon
11	chr3:177405800-177411600	Weak transcription	Fetal Brain Male	brain
12	chr3:177406000-177406400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
13	chr3:177406000-177406600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:177406000-177406600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:177406000-177407000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:177406200-177406600	Flanking Active TSS	Brain Angular Gyrus	brain
17	chr3:177406200-177406600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:177406200-177406800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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