Variant report

Variant	rs367671871
Chromosome Location	chr3:195635482-195635483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr3:195633738-195635772	MCF-7	breast:	n/a	n/a
2	POLR2A	chr3:195633615-195635701	GM12878	blood:	n/a	n/a
3	MXI1	chr3:195634465-195637159	SK-N-SH	brain:	n/a	chr3:195635673-195635682 chr3:195634896-195634905
4	E2F6	chr3:195634713-195635543	K562	blood:	n/a	n/a
5	GATA3	chr3:195633854-195635601	MCF-7	breast:	n/a	chr3:195634918-195634925 chr3:195634778-195634791 chr3:195634297-195634306
6	CTBP2	chr3:195635012-195635571	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr3:195633042-195635567	GM12878	blood:	n/a	n/a
8	SIN3A	chr3:195634618-195635629	H1-hESC	embryonic stem cell:	n/a	chr3:195634894-195634903 chr3:195634896-195634905
9	UBTF	chr3:195635042-195635538	K562	blood:	n/a	n/a
10	NFIC	chr3:195634416-195635491	ECC-1	luminal epithelium:	n/a	n/a
11	POLR2A	chr3:195633549-195635535	GM12892	blood:	n/a	n/a
12	TBP	chr3:195635257-195635593	H1-hESC	embryonic stem cell:	n/a	n/a
13	TCF12	chr3:195634544-195635492	ECC-1	luminal epithelium:	n/a	n/a
14	ELF1	chr3:195633697-195635589	MCF-7	breast:	n/a	n/a
15	KAP1	chr3:195634520-195635508	HEK293	kidney:	n/a	n/a
16	BHLHE40	chr3:195632762-195635654	GM12878	blood:	n/a	chr3:195634894-195634903 chr3:195634893-195634906 chr3:195634895-195634904 chr3:195634896-195634905 chr3:195634895-195634904 chr3:195634889-195634910
17	ZBTB7A	chr3:195635402-195636942	K562	blood:	n/a	chr3:195636361-195636369 chr3:195636360-195636368
18	MAX	chr3:195633785-195635632	MCF-7	breast:	n/a	chr3:195634895-195634904
19	USF1	chr3:195634614-195635606	ECC-1	luminal epithelium:	n/a	chr3:195634894-195634903 chr3:195634893-195634906 chr3:195634895-195634904 chr3:195634896-195634905 chr3:195634895-195634904 chr3:195634889-195634910 chr3:195634894-195634905
20	POLR2A	chr3:195633232-195635540	GM15510	blood:	n/a	n/a
21	MAX	chr3:195634575-195636997	ECC-1	luminal epithelium:	n/a	chr3:195634895-195634904
22	POLR2A	chr3:195635104-195635634	H1-neurons	neurons:	n/a	n/a
23	E2F6	chr3:195634490-195635578	K562	blood:	n/a	chr3:195634703-195634715
24	POLR2A	chr3:195633637-195635749	HL-60	blood:	n/a	n/a
25	POLR2A	chr3:195633119-195637008	GM19193	blood:	n/a	n/a
26	POLR2A	chr3:195632863-195637021	GM19099	blood:	n/a	n/a
27	MXI1	chr3:195634681-195637229	IMR90	lung:	n/a	chr3:195635673-195635682 chr3:195634896-195634905
28	POLR2A	chr3:195635244-195635711	H1-neurons	neurons:	n/a	n/a
29	MAX	chr3:195634643-195635606	ECC-1	luminal epithelium:	n/a	chr3:195634895-195634904
30	POLR2A	chr3:195634006-195635701	GM12878	blood:	n/a	n/a
31	ZBTB7A	chr3:195634802-195637031	ECC-1	luminal epithelium:	n/a	chr3:195636361-195636369 chr3:195636360-195636368
32	SIN3AK20	chr3:195633677-195635816	MCF-7	breast:	n/a	n/a
33	BHLHE40	chr3:195634354-195635528	K562	blood:	n/a	chr3:195634894-195634903 chr3:195634893-195634906 chr3:195634895-195634904 chr3:195634896-195634905 chr3:195634895-195634904 chr3:195634889-195634910
34	MAZ	chr3:195634499-195637390	K562	blood:	n/a	chr3:195634895-195634904
35	MTA3	chr3:195632883-195635530	GM12878	blood:	n/a	n/a
36	POLR2A	chr3:195633177-195635574	GM18505	blood:	n/a	n/a
37	MAX	chr3:195634344-195635646	K562	blood:	n/a	chr3:195634895-195634904
38	USF1	chr3:195634520-195635542	HCT-116	colon:	n/a	chr3:195634894-195634903 chr3:195634893-195634906 chr3:195634895-195634904 chr3:195634896-195634905 chr3:195634895-195634904 chr3:195634889-195634910 chr3:195634894-195634905
39	POLR2A	chr3:195635102-195635496	K562	blood:	n/a	n/a
40	GTF2F1	chr3:195635400-195635588	K562	blood:	n/a	n/a
41	EP300	chr3:195635265-195636459	T-47D	breast:	n/a	chr3:195635785-195635801 chr3:195636136-195636152 chr3:195635792-195635808 chr3:195636027-195636043 chr3:195635772-195635788 chr3:195635937-195635953 chr3:195636264-195636280 chr3:195635998-195636014
42	MXI1	chr3:195632857-195635556	GM12878	blood:	n/a	chr3:195634896-195634905
43	CHD1	chr3:195635456-195635605	GM12878	blood:	n/a	n/a
44	POLR2A	chr3:195634713-195635524	MCF-7	breast:	n/a	n/a
45	EBF1	chr3:195635289-195635626	GM12878	blood:	n/a	n/a
46	POLR2A	chr3:195633588-195635609	GM12892	blood:	n/a	n/a
47	ZBTB7A	chr3:195635309-195637119	ECC-1	luminal epithelium:	n/a	chr3:195636361-195636369 chr3:195636360-195636368
48	HA-E2F1	chr3:195633900-195635578	MCF-7	breast:	n/a	chr3:195634703-195634715
49	POLR2A	chr3:195635065-195635495	MCF-7	breast:	n/a	n/a
50	RUNX3	chr3:195634373-195635557	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:195635437-195635487	HUVEC	blood vessel:	n/a
2	chr3:195635437-195635487	HepG2	liver:	n/a
3	chr3:195635437-195635487	IMR90	lung:	fetal
4	chr3:195635437-195635487	Jurkat	blood:	n/a
5	chr3:195635437-195635487	HEEpiC	esophagus:	n/a
6	chr3:195635437-195635487	BE2_C	brain:	n/a
7	chr3:195635437-195635487	HNPCEpiC	eye:	n/a
8	chr3:195635437-195635487	PFSK-1	brain:	n/a
9	chr3:195635437-195635487	GM12878	blood:	n/a
10	chr3:195635437-195635487	AG09309	skin:	n/a
11	chr3:195635437-195635487	ProgFib	skin:	n/a
12	chr3:195635437-195635487	CMK	blood:	n/a
13	chr3:195635437-195635487	HCT-116	colon:	n/a
14	chr3:195635437-195635487	GM19239	blood:	n/a
15	chr3:195635437-195635487	HRCEpiC	kidney:	n/a
16	chr3:195635437-195635487	AG04449	skin:	fetal
17	chr3:195635437-195635487	Caco-2	colon:	n/a
18	chr3:195635437-195635487	U87	brain:	n/a
19	chr3:195635437-195635487	SKMC	muscle:	n/a
20	chr3:195635437-195635487	GM06990	blood:	n/a
21	chr3:195635437-195635487	LNCaP	prostate:	n/a
22	chr3:195635437-195635487	SK-N-MC	brain:	n/a
23	chr3:195635437-195635487	A549	lung:	n/a
24	chr3:195635437-195635487	HRPEpiC	eye:	n/a
25	chr3:195635437-195635487	HL-60	blood:	n/a
26	chr3:195635437-195635487	NHBE	bronchial:	n/a
27	chr3:195635437-195635487	Hepatocyte	liver:	n/a
28	chr3:195635437-195635487	PANC-1	pancreas:	n/a
29	chr3:195635437-195635487	H1-hESC	embryonic stem cell:	embryo
30	chr3:195635437-195635487	SK-N-SH	brain:	n/a
31	chr3:195635437-195635487	NH-A	brain:	n/a
32	chr3:195635437-195635487	PrEC	prostate:	n/a
33	chr3:195635437-195635487	NT2-D1	testis:	n/a
34	chr3:195635437-195635487	AG04450	lung:	fetal
35	chr3:195635437-195635487	BJ	skin:	n/a
36	chr3:195635437-195635487	HEK293	kidney:	embryo
37	chr3:195635437-195635487	ovcar-3	ovarian:	n/a
38	chr3:195635437-195635487	K562	blood:	n/a
39	chr3:195635437-195635487	HCF	heart:	n/a
40	chr3:195635437-195635487	GM12892	blood:	n/a
41	chr3:195635437-195635487	Hela-S3	cervix:	n/a
42	chr3:195635437-195635487	AG09319	gingival:	n/a
43	chr3:195635437-195635487	HAEpiC	amniotic membrane:	n/a
44	chr3:195635437-195635487	HCM	heart:	n/a
45	chr3:195635437-195635487	GM12891	blood:	n/a
46	chr3:195635437-195635487	NHDF-neo	bronchial:	n/a
47	chr3:195635437-195635487	MCF-7	breast:	n/a
48	chr3:195635437-195635487	RPTEC	kidney:	n/a
49	chr3:195635437-195635487	AG10803	skin:	n/a
50	chr3:195635437-195635487	HRE	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:195409239..195411118-chr3:195634886..195637681,2	K562	blood:
2	chr3:195602309..195605964-chr3:195633937..195639111,7	MCF-7	breast:
3	chr3:195620885..195622532-chr3:195635337..195638039,2	K562	blood:
4	chr3:195634985..195639388-chr3:195640414..195643668,6	K562	blood:
5	chr3:195586183..195589245-chr3:195634778..195636892,3	MCF-7	breast:
6	chr3:195601233..195610120-chr3:195632410..195638442,11	MCF-7	breast:
7	chr17:57922900..57925382-chr3:195635106..195637733,2	MCF-7	breast:
8	chr3:195623300..195626521-chr3:195635118..195637851,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC20-3	chr3:195634947-195635649	ENSG00000224614

Variant related genes	Relation type
ENSG00000226155	TF binding region
ENSG00000226155	CpG island
ENSG00000273009	Chromatin interaction
ENSG00000061938	Chromatin interaction
ENSG00000242086	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000223783	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv1001387	chr3:195186128-195661538	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
3	nsv428102	chr3:195201080-195829426	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	nsv428430	chr3:195201080-195829426	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv1006217	chr3:195312401-195643229	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
6	nsv536882	chr3:195312401-195643229	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
7	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
8	nsv1006165	chr3:195383130-195777211	Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
9	nsv471621	chr3:195417664-195795474	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	esv2751988	chr3:195433543-195651349	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
11	esv2756651	chr3:195433543-195696720	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
12	nsv432528	chr3:195433543-195696720	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
13	esv2754016	chr3:195433543-195753766	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
14	nsv822410	chr3:195438740-195725565	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
15	nsv878162	chr3:195475989-195641908	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
16	nsv878163	chr3:195477791-195641908	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
17	nsv997893	chr3:195501392-195642192	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
18	nsv1005193	chr3:195526571-195709662	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
19	nsv878167	chr3:195550366-195637439	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
20	nsv878168	chr3:195553259-195644332	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
21	nsv1002591	chr3:195564086-195643229	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
22	nsv530397	chr3:195565159-195740416	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
23	nsv593056	chr3:195571024-195656731	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
24	nsv1007235	chr3:195582468-195651911	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
25	nsv1002629	chr3:195582468-195769275	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
26	esv1811906	chr3:195598137-195637469	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
27	nsv1014602	chr3:195606770-195661538	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
28	nsv829827	chr3:195608866-195760829	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
29	nsv469518	chr3:195623722-195795474	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
30	nsv482784	chr3:195623722-195795474	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
31	nsv1011404	chr3:195627654-195656614	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
32	esv1797272	chr3:195628636-195636469	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
33	esv1803975	chr3:195628636-195636469	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
34	nsv593057	chr3:195633438-195636469	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
35	nsv593058	chr3:195635257-195636667	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
36	esv3486423	chr3:195635405-195637853	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
37	esv3486424	chr3:195635405-195637853	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195632600-195637200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr3:195632800-195635600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr3:195632800-195635600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:195632800-195635600	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr3:195632800-195635800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr3:195632800-195635800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:195633000-195635600	Flanking Active TSS	Liver	Liver
8	chr3:195633000-195636000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:195633000-195636000	Flanking Active TSS	Dnd41	blood
10	chr3:195633200-195635600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr3:195633200-195635600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:195633200-195635600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr3:195633200-195635600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:195633200-195635600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr3:195633200-195635600	Flanking Active TSS	Osteobl	bone
16	chr3:195633200-195635800	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr3:195633200-195635800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr3:195633200-195636200	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr3:195633400-195635600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:195633400-195635600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
21	chr3:195633400-195635600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr3:195633400-195635800	Enhancers	Fetal Brain Male	brain
23	chr3:195633400-195635800	Enhancers	Fetal Heart	heart
24	chr3:195633600-195636000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:195633600-195636000	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr3:195633600-195636000	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr3:195633800-195635600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:195633800-195635800	Flanking Active TSS	Placenta	Placenta
29	chr3:195634000-195635600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr3:195634000-195635600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:195634000-195635600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr3:195634000-195635600	Flanking Active TSS	Right Ventricle	heart
33	chr3:195634000-195636000	Flanking Active TSS	Colonic Mucosa	Colon
34	chr3:195634200-195635600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:195634200-195635600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:195634200-195635600	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr3:195634200-195635600	Flanking Active TSS	Esophagus	oesophagus
38	chr3:195634200-195636000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr3:195634400-195635600	Flanking Active TSS	Fetal Intestine Small	intestine
40	chr3:195634400-195635600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
41	chr3:195634400-195635600	Flanking Active TSS	Right Atrium	heart
42	chr3:195634400-195635600	Flanking Active TSS	Spleen	Spleen
43	chr3:195634400-195635800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:195634400-195635800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
45	chr3:195634400-195636800	Active TSS	Small Intestine	intestine
46	chr3:195634600-195635600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
47	chr3:195634600-195635600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:195634600-195635600	Bivalent Enhancer	Stomach Mucosa	stomach
49	chr3:195634600-195635600	Flanking Active TSS	K562	blood
50	chr3:195634600-195635600	Flanking Active TSS	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links