Variant report

Variant	rs3677
Chromosome Location	chr17:17772251-17772252
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17748143..17750438-chr17:17769133..17772614,3	K562	blood:
2	chr17:17737624..17740347-chr17:17769173..17774122,4	K562	blood:

Variant related genes	Relation type
ENSG00000072310	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11652861	1.00[LWK][hapmap];1.00[MEX][hapmap]
rs11656629	1.00[LWK][hapmap]
rs12603505	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
5	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
6	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
9	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
10	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
11	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
13	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
14	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
15	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
16	nsv907760	chr17:17649423-17782404	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
17	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
18	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
19	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
20	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
21	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
22	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17756800-17789600	Weak transcription	Small Intestine	intestine
2	chr17:17758800-17780200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:17760000-17775800	Weak transcription	Psoas Muscle	Psoas
4	chr17:17764000-17774000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr17:17764000-17777800	Weak transcription	Hela-S3	cervix
6	chr17:17764200-17774400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:17764200-17803000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr17:17764400-17799600	Weak transcription	A549	lung
9	chr17:17765400-17774200	Strong transcription	HSMMtube	muscle
10	chr17:17767400-17779600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr17:17767600-17782000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:17767600-17782000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr17:17767600-17807400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:17768200-17773800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr17:17768400-17781400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr17:17768400-17792200	Weak transcription	GM12878-XiMat	blood
17	chr17:17769200-17772800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr17:17769200-17772800	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr17:17769200-17773600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr17:17769200-17774000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:17769200-17774600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr17:17769200-17789400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr17:17769200-17804600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:17769400-17772600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr17:17769400-17773400	Strong transcription	NHEK	skin
26	chr17:17769400-17773800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr17:17769400-17774000	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr17:17769400-17774000	Strong transcription	Osteobl	bone
29	chr17:17769400-17777000	Strong transcription	Esophagus	oesophagus
30	chr17:17769400-17792400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr17:17769600-17772400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr17:17769600-17773000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr17:17769600-17773000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr17:17769600-17773800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr17:17769600-17773800	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr17:17769600-17774000	Strong transcription	Gastric	stomach
37	chr17:17769600-17774200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr17:17769600-17774200	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr17:17769600-17795200	Strong transcription	Primary T cells from cord blood	blood
40	chr17:17769800-17772800	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr17:17769800-17773400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr17:17769800-17773800	Enhancers	H1 Cell Line	embryonic stem cell
43	chr17:17769800-17774400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr17:17770000-17772600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
45	chr17:17770000-17779800	Weak transcription	Stomach Mucosa	stomach
46	chr17:17770200-17775000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr17:17770400-17772600	Genic enhancers	Fetal Muscle Trunk	muscle
48	chr17:17770400-17774000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr17:17770400-17774200	Genic enhancers	Fetal Stomach	stomach
50	chr17:17770600-17773000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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