Variant report

Variant	rs367820952
Chromosome Location	chr4:150994553-150994554
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr4:150994502-150994558	HepG2	liver:	n/a	n/a
2	MYC	chr4:150994329-150994795	MCF10A-Er-Src	breast:	n/a	n/a
3	NFIC	chr4:150994063-150995017	SK-N-SH	brain:	n/a	n/a
4	JUND	chr4:150994128-150994830	SK-N-SH	brain:	n/a	chr4:150994325-150994337 chr4:150994538-150994548
5	CEBPB	chr4:150994231-150994721	IMR90	lung:	n/a	n/a
6	STAT3	chr4:150994321-150994654	Hela-S3	cervix:	n/a	n/a
7	STAT3	chr4:150994274-150994737	MCF10A-Er-Src	breast:	n/a	n/a
8	EP300	chr4:150994102-150994944	SK-N-SH	brain:	n/a	chr4:150994868-150994882 chr4:150994408-150994422
9	RCOR1	chr4:150994343-150994650	Hela-S3	cervix:	n/a	n/a
10	TCF12	chr4:150994035-150994938	SK-N-SH	brain:	n/a	n/a
11	TEAD4	chr4:150994116-150994843	SK-N-SH	brain:	n/a	n/a
12	MAX	chr4:150994250-150994777	A549	lung:	n/a	n/a
13	EP300	chr4:150993595-150994860	A549	lung:	n/a	chr4:150994408-150994422
14	GATA3	chr4:150993646-150994787	A549	lung:	n/a	n/a
15	POLR2A	chr4:150994191-150994726	U87	brain:	n/a	n/a
16	YY1	chr4:150994420-150994651	SK-N-SH_RA	brain:	n/a	n/a
17	PBX3	chr4:150994146-150994819	SK-N-SH	brain:	n/a	n/a
18	STAT3	chr4:150994286-150994892	MCF10A-Er-Src	breast:	n/a	n/a
19	FOS	chr4:150994324-150994626	MCF10A-Er-Src	breast:	n/a	chr4:150994325-150994337 chr4:150994538-150994548
20	MEF2A	chr4:150994129-150994832	SK-N-SH	brain:	n/a	chr4:150994385-150994406 chr4:150994385-150994406
21	GATA3	chr4:150994094-150994807	SK-N-SH	brain:	n/a	n/a
22	TBP	chr4:150994333-150994738	Hela-S3	cervix:	n/a	n/a
23	BRCA1	chr4:150994320-150994731	Hela-S3	cervix:	n/a	n/a
24	SP1	chr4:150994185-150994750	A549	lung:	n/a	n/a
25	FOS	chr4:150994261-150994738	MCF10A-Er-Src	breast:	n/a	chr4:150994325-150994337 chr4:150994538-150994548
26	MAX	chr4:150994257-150994814	SK-N-SH	brain:	n/a	n/a
27	FOS	chr4:150994325-150994678	MCF10A-Er-Src	breast:	n/a	chr4:150994325-150994337 chr4:150994538-150994548
28	EP300	chr4:150994073-150994823	A549	lung:	n/a	chr4:150994408-150994422
29	FOSL2	chr4:150994125-150994845	SK-N-SH	brain:	n/a	chr4:150994325-150994337 chr4:150994538-150994548
30	MAFK	chr4:150994214-150994685	IMR90	lung:	n/a	n/a
31	GATA3	chr4:150994057-150994831	SK-N-SH	brain:	n/a	n/a
32	MAX	chr4:150994236-150994822	A549	lung:	n/a	n/a
33	POLR2A	chr4:150994410-150994634	MCF10A-Er-Src	breast:	n/a	n/a
34	POLR2A	chr4:150994218-150994777	SK-N-SH	brain:	n/a	n/a
35	CEBPB	chr4:150994206-150994788	A549	lung:	n/a	n/a
36	EP300	chr4:150994010-150994876	SK-N-SH	brain:	n/a	chr4:150994408-150994422
37	FOS	chr4:150994292-150994649	MCF10A-Er-Src	breast:	n/a	chr4:150994325-150994337 chr4:150994538-150994548
38	MAX	chr4:150994333-150994744	Hela-S3	cervix:	n/a	n/a
39	POLR2A	chr4:150994231-150994770	U87	brain:	n/a	n/a
40	TEAD4	chr4:150994086-150994771	SK-N-SH	brain:	n/a	n/a
41	STAT3	chr4:150994279-150994661	MCF10A-Er-Src	breast:	n/a	n/a
42	MYC	chr4:150994191-150994790	MCF10A-Er-Src	breast:	n/a	n/a
43	TCF12	chr4:150993623-150994873	A549	lung:	n/a	n/a
44	MAFK	chr4:150994274-150994617	Hela-S3	cervix:	n/a	n/a
45	CEBPB	chr4:150993691-150994700	A549	lung:	n/a	chr4:150994035-150994047
46	EP300	chr4:150994214-150994703	Hela-S3	cervix:	n/a	chr4:150994408-150994422
47	NFIC	chr4:150994258-150994826	SK-N-SH	brain:	n/a	n/a
48	YY1	chr4:150994409-150994632	SK-N-SH_RA	brain:	n/a	n/a
49	MAFK	chr4:150994391-150994603	HepG2	liver:	n/a	n/a
50	JUND	chr4:150994107-150994769	SK-N-SH	brain:	n/a	chr4:150994325-150994337 chr4:150994538-150994548

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:150987108..150989681-chr4:150993740..150996286,2	K562	blood:

Variant related genes	Relation type
DCLK2	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3418309	chr4:150994375-150994752	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150989800-150998400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:150990600-150995400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:150990600-150995400	Enhancers	Osteobl	bone
4	chr4:150990800-150995000	Enhancers	NHDF-Ad	bronchial
5	chr4:150990800-150995400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:150993800-150995000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:150994000-150994600	Enhancers	HSMM	muscle
8	chr4:150994000-150994800	Enhancers	Adipose Nuclei	Adipose
9	chr4:150994000-150995000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:150994000-150995000	Enhancers	NHLF	lung
11	chr4:150994000-150999000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:150994200-150994800	Enhancers	Brain Angular Gyrus	brain
13	chr4:150994200-150995000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:150994200-150995000	Enhancers	Brain Anterior Caudate	brain
15	chr4:150994200-150995000	Enhancers	NH-A	brain
16	chr4:150994400-150994800	Enhancers	Colon Smooth Muscle	Colon
17	chr4:150994400-150995000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:150994400-150995200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:150994400-150995600	Enhancers	A549	lung
20	chr4:150994400-150998800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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