Variant report

Variant	rs367853698
Chromosome Location	chr15:43813677-43813678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43807917..43810717-chr15:43812007..43814882,2	K562	blood:
2	chr15:43812804..43815788-chr15:43816222..43819010,3	K562	blood:

Variant related genes	Relation type
ENSG00000166963	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv515877	chr15:43802024-43818052	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv518707	chr15:43802024-43826557	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv832988	chr15:43804641-43976862	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	esv3418023	chr15:43813328-43813682	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43810400-43826200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:43810600-43826400	Weak transcription	Spleen	Spleen
3	chr15:43810800-43814200	Weak transcription	Gastric	stomach
4	chr15:43810800-43817600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:43810800-43824000	Weak transcription	Fetal Kidney	kidney
6	chr15:43810800-43826000	Weak transcription	Esophagus	oesophagus
7	chr15:43811000-43814200	Weak transcription	Lung	lung
8	chr15:43811000-43818600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:43811000-43828600	Weak transcription	Pancreas	Pancrea
10	chr15:43811200-43813800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:43811200-43820600	Weak transcription	Colonic Mucosa	Colon
12	chr15:43811200-43823600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:43811200-43826800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:43811400-43829200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:43811800-43815800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr15:43812000-43823200	Strong transcription	Stomach Smooth Muscle	stomach
17	chr15:43812000-43844400	Weak transcription	Fetal Brain Male	brain
18	chr15:43812200-43813800	Genic enhancers	Dnd41	blood
19	chr15:43812200-43818000	Strong transcription	Fetal Intestine Large	intestine
20	chr15:43812200-43819000	Strong transcription	Osteobl	bone
21	chr15:43812200-43823200	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:43812200-43823800	Strong transcription	NHLF	lung
23	chr15:43812400-43817800	ZNF genes & repeats	Aorta	Aorta
24	chr15:43812400-43818200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:43812400-43819000	ZNF genes & repeats	Fetal Stomach	stomach
26	chr15:43812400-43821400	Strong transcription	HSMMtube	muscle
27	chr15:43812400-43823200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:43812600-43816400	Genic enhancers	Brain Angular Gyrus	brain
29	chr15:43812600-43816400	Genic enhancers	Brain Anterior Caudate	brain
30	chr15:43812600-43816400	Strong transcription	Thymus	Thymus
31	chr15:43812600-43817600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:43812600-43817800	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:43812600-43818200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:43812600-43818200	Strong transcription	Left Ventricle	heart
35	chr15:43812600-43818800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:43812600-43819600	Strong transcription	HSMM	muscle
37	chr15:43812600-43819600	Strong transcription	NH-A	brain
38	chr15:43812600-43820000	Genic enhancers	Brain Hippocampus Middle	brain
39	chr15:43812600-43820400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:43812600-43823200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:43812600-43823200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:43812800-43813800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:43812800-43814600	Strong transcription	K562	blood
44	chr15:43812800-43815200	Strong transcription	Fetal Thymus	thymus
45	chr15:43812800-43815400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:43812800-43815400	Strong transcription	Ovary	ovary
47	chr15:43812800-43816000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:43812800-43816200	Strong transcription	Primary hematopoietic stem cells	blood
49	chr15:43812800-43816600	Strong transcription	Primary T cells from cord blood	blood
50	chr15:43812800-43817600	Strong transcription	Fetal Lung	lung

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