Variant report

Variant	rs367858044
Chromosome Location	chr2:11053422-11053423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10977377..10978983-chr2:11051588..11054422,2	MCF-7	breast:
2	chr2:11052090..11054765-chr2:11077274..11080049,2	K562	blood:
3	chr2:11045162..11047241-chr2:11052527..11054468,2	K562	blood:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580969	chr2:11033567-11081645	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv873662	chr2:11035430-11061156	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv521177	chr2:11040146-11066699	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv3341963	chr2:11051501-11053499	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3370687	chr2:11052551-11055049	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11051200-11054000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
2	chr2:11051200-11054600	Bivalent Enhancer	Placenta	Placenta
3	chr2:11051600-11053600	Bivalent Enhancer	Fetal Brain Male	brain
4	chr2:11051600-11054600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
5	chr2:11051600-11056200	Active TSS	Brain Angular Gyrus	brain
6	chr2:11051800-11053600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:11052000-11053800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
8	chr2:11052000-11053800	Enhancers	Gastric	stomach
9	chr2:11052000-11054200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
10	chr2:11052200-11053600	Enhancers	Pancreas	Pancrea
11	chr2:11052200-11054600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:11052400-11054200	Bivalent Enhancer	Spleen	Spleen
13	chr2:11052600-11054600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:11052800-11053800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
15	chr2:11052800-11054200	Weak transcription	A549	lung
16	chr2:11052800-11054800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:11052800-11055400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
18	chr2:11053000-11053600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:11053200-11053600	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr2:11053200-11053800	Transcr. at gene 5' and 3'	Cortex derived primary cultured neurospheres	brain
21	chr2:11053200-11053800	Bivalent Enhancer	Right Ventricle	heart
22	chr2:11053200-11054200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:11053400-11053600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr2:11053400-11053600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
25	chr2:11053400-11053600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
26	chr2:11053400-11053600	Bivalent Enhancer	Lung	lung
27	chr2:11053400-11053800	Bivalent Enhancer	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links