Variant report

Variant	rs367873
Chromosome Location	chr16:79648152-79648153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7189052	1.00[AMR][1000 genomes]
rs7190113	1.00[AMR][1000 genomes]
rs7194988	1.00[AMR][1000 genomes]
rs7196551	1.00[AMR][1000 genomes]
rs7205122	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79635600-79652400	Weak transcription	Spleen	Spleen
2	chr16:79636200-79653800	Weak transcription	Right Atrium	heart
3	chr16:79640800-79650800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr16:79642200-79651800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr16:79645000-79652400	Weak transcription	Fetal Muscle Leg	muscle
6	chr16:79645200-79652400	Weak transcription	Placenta	Placenta
7	chr16:79646400-79649000	Enhancers	HMEC	breast
8	chr16:79647200-79651200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr16:79647400-79652200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr16:79647400-79652200	Weak transcription	HSMMtube	muscle
11	chr16:79648000-79648200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr16:79648000-79648200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr16:79648000-79648200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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