Variant report

Variant	rs367886749
Chromosome Location	chr6:28186204-28186205
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28184931..28189194-chr6:28190077..28194573,12	MCF-7	breast:
2	chr6:28184339..28187958-chr6:28190844..28194750,7	MCF-7	breast:
3	chr6:28182735..28195387-chr6:28315960..28325841,32	K562	blood:
4	chr6:28108272..28111912-chr6:28184259..28187979,3	MCF-7	breast:
5	chr6:28185564..28187470-chr6:28218621..28220714,2	MCF-7	breast:
6	chr6:27805809..27807448-chr6:28184413..28187037,2	MCF-7	breast:
7	chr6:28184789..28191313-chr6:28230652..28235913,7	K562	blood:
8	chr6:28183629..28195178-chr6:28316250..28325659,29	K562	blood:
9	chr6:28100317..28107200-chr6:28184436..28191088,8	MCF-7	breast:
10	chr6:28104139..28106070-chr6:28185714..28187223,2	MCF-7	breast:
11	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:
12	chr6:28184805..28186411-chr6:28255755..28258597,2	K562	blood:
13	chr6:27775362..27779371-chr6:28186093..28189957,4	K562	blood:
14	chr6:28184981..28190782-chr6:28297491..28307222,23	K562	blood:
15	chr6:28103775..28113920-chr6:28177995..28190115,32	K562	blood:
16	chr6:28182366..28191375-chr6:28300021..28306741,17	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137185	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000197062	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000269293	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000198315	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	nsv527115	chr6:28185726-28186554	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28180800-28186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28184600-28186600	Enhancers	Spleen	Spleen
3	chr6:28184800-28186400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr6:28185200-28186400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr6:28185400-28186400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:28185400-28186400	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr6:28185600-28186400	Flanking Active TSS	Hela-S3	cervix
8	chr6:28185600-28186600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:28185600-28187000	Active TSS	H9 Cell Line	embryonic stem cell
10	chr6:28185600-28187400	Active TSS	Stomach Smooth Muscle	stomach
11	chr6:28185800-28186400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
12	chr6:28185800-28186400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr6:28185800-28186400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
14	chr6:28185800-28186400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:28185800-28186400	Flanking Active TSS	Right Ventricle	heart
16	chr6:28185800-28186400	Enhancers	Small Intestine	intestine
17	chr6:28185800-28186400	Flanking Active TSS	HepG2	liver
18	chr6:28185800-28186600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:28185800-28187000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr6:28185800-28187200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr6:28186000-28186400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr6:28186000-28186400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:28186000-28186400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:28186000-28186400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
25	chr6:28186000-28186400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
26	chr6:28186000-28186400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
27	chr6:28186000-28186400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:28186000-28186400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:28186000-28186400	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr6:28186000-28186400	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
31	chr6:28186000-28186400	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
32	chr6:28186000-28186400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
33	chr6:28186000-28186400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
34	chr6:28186000-28186400	Flanking Active TSS	Brain Substantia Nigra	brain
35	chr6:28186000-28186400	Flanking Active TSS	Colon Smooth Muscle	Colon
36	chr6:28186000-28186400	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr6:28186000-28186400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr6:28186000-28186400	Flanking Active TSS	Fetal Heart	heart
39	chr6:28186000-28186400	Flanking Active TSS	Fetal Lung	lung
40	chr6:28186000-28186400	Flanking Active TSS	Left Ventricle	heart
41	chr6:28186000-28186400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr6:28186000-28186400	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr6:28186000-28186400	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr6:28186000-28186400	Flanking Active TSS	A549	lung
45	chr6:28186000-28186400	Flanking Active TSS	GM12878-XiMat	blood
46	chr6:28186000-28186400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr6:28186000-28186600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:28186000-28186600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
49	chr6:28186000-28186600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr6:28186000-28186600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle

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