Variant report

Variant	rs367915164
Chromosome Location	chr7:66384120-66384121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr7:66383991-66385229	PBDE	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66308191..66311276-chr7:66384066..66387492,7	MCF-7	breast:

Variant related genes	Relation type
TMEM248	TF binding region
ENSG00000230583	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3324611	chr7:66383817-66388015	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66311000-66385200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:66311200-66385200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:66350600-66385200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:66364400-66385400	Weak transcription	HSMMtube	muscle
5	chr7:66364800-66385000	Weak transcription	Brain Anterior Caudate	brain
6	chr7:66366400-66385600	Weak transcription	Brain Substantia Nigra	brain
7	chr7:66368000-66385400	Weak transcription	Adipose Nuclei	Adipose
8	chr7:66369000-66385400	Weak transcription	Thymus	Thymus
9	chr7:66369000-66385600	Weak transcription	Ovary	ovary
10	chr7:66370000-66385200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:66370200-66385400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:66370800-66385000	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:66371000-66385200	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:66371200-66385400	Weak transcription	Fetal Intestine Small	intestine
15	chr7:66371200-66385600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:66371800-66385400	Weak transcription	Fetal Stomach	stomach
17	chr7:66379000-66385200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:66379400-66384200	Weak transcription	K562	blood
19	chr7:66380800-66384800	Weak transcription	GM12878-XiMat	blood
20	chr7:66381200-66385000	Weak transcription	HepG2	liver
21	chr7:66383000-66385000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr7:66383000-66385200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr7:66383000-66385200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:66383000-66385400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:66383000-66385400	Weak transcription	Osteobl	bone
26	chr7:66383200-66385200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:66383400-66385200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:66383400-66385200	Weak transcription	Psoas Muscle	Psoas
29	chr7:66383400-66385400	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links