Variant report

Variant	rs367928984
Chromosome Location	chr11:64782187-64782188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr11:64780953-64782379	K562	blood:	n/a	chr11:64781921-64781932
2	POLR2A	chr11:64780882-64782355	K562	blood:	n/a	n/a
3	BCL3	chr11:64782091-64782460	A549	lung:	n/a	n/a
4	POLR2A	chr11:64780662-64782497	K562	blood:	n/a	n/a
5	RCOR1	chr11:64780965-64782576	Hela-S3	cervix:	n/a	n/a
6	GATA1	chr11:64781141-64782534	PBDE	blood:	n/a	chr11:64782370-64782377 chr11:64782370-64782377 chr11:64782368-64782377 chr11:64782003-64782020 chr11:64782370-64782377 chr11:64782368-64782378
7	MAZ	chr11:64780888-64782261	GM12878	blood:	n/a	chr11:64781434-64781444 chr11:64782115-64782125
8	CREB1	chr11:64780928-64782387	A549	lung:	n/a	n/a
9	SIN3AK20	chr11:64780727-64782536	MCF-7	breast:	n/a	n/a
10	CBX3	chr11:64780768-64782686	K562	blood:	n/a	n/a
11	POLR2A	chr11:64780844-64782318	GM19099	blood:	n/a	n/a
12	HDAC2	chr11:64781677-64782326	K562	blood:	n/a	n/a
13	TBL1XR1	chr11:64780935-64782262	K562	blood:	n/a	n/a
14	MAX	chr11:64780974-64782393	K562	blood:	n/a	chr11:64781434-64781444 chr11:64782115-64782125
15	POLR2A	chr11:64780828-64782667	PFSK-1	brain:	n/a	n/a
16	E2F6	chr11:64780882-64782430	A549	lung:	n/a	chr11:64782105-64782115 chr11:64781471-64781481 chr11:64781576-64781585
17	RFX5	chr11:64780888-64782207	Hela-S3	cervix:	n/a	n/a
18	TCF7L2	chr11:64780995-64782364	HCT-116	colon:	n/a	n/a
19	MYC	chr11:64780889-64782427	K562	blood:	n/a	chr11:64781434-64781444 chr11:64782115-64782125
20	POLR2A	chr11:64780959-64782346	GM12878	blood:	n/a	n/a
21	POLR2A	chr11:64781021-64782343	HepG2	liver:	n/a	n/a
22	MAX	chr11:64780844-64782542	A549	lung:	n/a	chr11:64781434-64781444 chr11:64782115-64782125
23	EGR1	chr11:64780907-64782419	K562	blood:	n/a	chr11:64781065-64781075 chr11:64781062-64781075
24	POLR2A	chr11:64780865-64782391	HUVEC	blood vessel:	n/a	n/a
25	CTCF	chr11:64782166-64782284	GM12878	blood:	n/a	n/a
26	MAX	chr11:64780900-64782359	SK-N-SH	brain:	n/a	chr11:64781434-64781444 chr11:64782115-64782125
27	POLR2A	chr11:64781010-64782381	GM18951	blood:	n/a	n/a
28	RAD21	chr11:64780819-64782331	HCT-116	colon:	n/a	chr11:64781306-64781315 chr11:64781142-64781152 chr11:64781137-64781156 chr11:64781142-64781154 chr11:64781140-64781153 chr11:64782061-64782073 chr11:64782027-64782041
29	MAX	chr11:64780975-64782355	H1-hESC	embryonic stem cell:	n/a	chr11:64781434-64781444 chr11:64782115-64782125
30	YY1	chr11:64780961-64782188	GM12891	blood:	n/a	chr11:64781921-64781932
31	POLR2A	chr11:64780667-64782568	HUVEC	blood vessel:	n/a	n/a
32	RCOR1	chr11:64780842-64782588	K562	blood:	n/a	n/a
33	POLR2A	chr11:64781035-64782270	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr11:64780971-64782282	H1-neurons	neurons:	n/a	n/a
35	CTCF	chr11:64780811-64782191	K562	blood:	n/a	chr11:64781139-64781152 chr11:64781136-64781154 chr11:64781138-64781159 chr11:64781804-64781822 chr11:64781658-64781671 chr11:64781137-64781153 chr11:64781896-64781909 chr11:64782028-64782041 chr11:64781805-64781821 chr11:64781139-64781148 chr11:64781655-64781673
36	MAX	chr11:64780519-64782556	HepG2	liver:	n/a	chr11:64781434-64781444 chr11:64782115-64782125
37	HDAC2	chr11:64781299-64782297	HepG2	liver:	n/a	n/a
38	E2F4	chr11:64780823-64782367	K562	blood:	n/a	chr11:64782105-64782115 chr11:64781471-64781481 chr11:64781576-64781585
39	PAX5	chr11:64780999-64782362	GM12892	blood:	n/a	n/a
40	POLR2A	chr11:64780675-64782875	HepG2	liver:	n/a	n/a
41	TAF1	chr11:64780971-64782242	PFSK-1	brain:	n/a	n/a
42	MAX	chr11:64780966-64782268	Hela-S3	cervix:	n/a	chr11:64781434-64781444 chr11:64782115-64782125
43	MYC	chr11:64780883-64782392	K562	blood:	n/a	chr11:64781434-64781444 chr11:64782115-64782125
44	CTBP2	chr11:64781134-64782340	H1-hESC	embryonic stem cell:	n/a	n/a
45	MXI1	chr11:64780880-64782243	HepG2	liver:	n/a	n/a
46	RAD21	chr11:64780729-64782346	HCT-116	colon:	n/a	chr11:64781306-64781315 chr11:64781142-64781152 chr11:64781137-64781156 chr11:64781142-64781154 chr11:64781140-64781153 chr11:64782061-64782073 chr11:64782027-64782041
47	FOXP2	chr11:64781338-64782387	PFSK-1	brain:	n/a	n/a
48	YY1	chr11:64780958-64782302	GM12878	blood:	n/a	chr11:64781921-64781932
49	MXI1	chr11:64781015-64782308	GM12878	blood:	n/a	n/a
50	POLR2A	chr11:64781343-64782322	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:64772580..64786543-chr11:64875055..64887722,37	MCF-7	breast:
2	chr11:64781519..64783137-chr11:66622872..66625514,2	MCF-7	breast:
3	chr11:64778534..64781013-chr11:64781668..64784168,3	MCF-7	breast:
4	chr11:64779777..64783339-chr11:64843637..64848045,5	K562	blood:
5	chr11:64681819..64686102-chr11:64779905..64782957,5	MCF-7	breast:
6	chr11:64779932..64783276-chr11:64862331..64864399,5	MCF-7	breast:
7	chr1:147735467..147736028-chr11:64781643..64782289,2	HCT-116	colon:
8	chr11:64780179..64786029-chr11:64807067..64810211,7	MCF-7	breast:
9	chr11:64781559..64786098-chr11:64888152..64890441,5	MCF-7	breast:
10	chr11:64780520..64784503-chr11:64834796..64838390,5	MCF-7	breast:
11	chr11:64780460..64784208-chr11:64862018..64864261,3	K562	blood:
12	chr11:64660891..64664747-chr11:64780644..64783500,5	K562	blood:
13	chr11:64739428..64743212-chr11:64780553..64782608,3	K562	blood:
14	chr11:64554818..64555671-chr11:64781741..64782297,2	MCF-7	breast:
15	chr11:64642873..64648975-chr11:64779425..64783727,9	MCF-7	breast:
16	chr11:64691872..64694652-chr11:64781595..64784560,2	K562	blood:
17	chr11:64683021..64685981-chr11:64781625..64784265,4	MCF-7	breast:
18	chr11:64778507..64787901-chr11:64877920..64890097,31	K562	blood:
19	chr11:64779881..64786783-chr11:64876081..64880870,13	MCF-7	breast:
20	chr11:64780338..64782626-chr11:64806994..64809935,3	K562	blood:
21	chr11:64781206..64783031-chr11:64845885..64848053,2	MCF-7	breast:
22	chr11:64680687..64682746-chr11:64781182..64783404,2	K562	blood:
23	chr11:64782119..64784477-chr11:64813341..64814905,2	MCF-7	breast:
24	chr11:64663247..64665501-chr11:64780433..64782538,2	K562	blood:
25	chr11:64684657..64687217-chr11:64779880..64782895,3	K562	blood:
26	chr11:64781815..64785733-chr11:64830700..64833952,3	MCF-7	breast:
27	chr11:64779637..64784611-chr11:64849890..64854060,9	K562	blood:
28	chr11:64778492..64782821-chr11:64947057..64951070,4	K562	blood:
29	chr11:64781693..64784252-chr11:64827327..64829336,2	MCF-7	breast:
30	chr11:64663591..64666697-chr11:64779404..64783379,5	MCF-7	breast:
31	chr11:64778393..64787449-chr11:64877655..64886980,25	K562	blood:
32	chr11:64780038..64784183-chr11:64845056..64847666,6	K562	blood:
33	chr11:64779668..64784219-chr11:64849890..64854919,7	K562	blood:
34	chr11:64781095..64782950-chr11:64792399..64795150,2	MCF-7	breast:
35	chr11:64779861..64784378-chr11:64881512..64885598,8	MCF-7	breast:
36	chr11:64781661..64782563-chr9:132815713..132816653,2	Hela-S3	cervix:
37	chr11:64779689..64782801-chr11:64896069..64898995,3	MCF-7	breast:
38	chr11:64779606..64783503-chr11:64793292..64796940,8	MCF-7	breast:
39	chr11:64781269..64783468-chr11:64850067..64853147,4	MCF-7	breast:
40	chr11:64571261..64574122-chr11:64781837..64784528,2	K562	blood:
41	chr11:64779401..64787584-chr11:64862745..64867550,9	MCF-7	breast:
42	chr11:64780841..64783611-chr11:64936959..64938535,2	K562	blood:
43	chr11:64779913..64786139-chr11:64862018..64866625,10	K562	blood:
44	chr11:64660429..64663235-chr11:64780866..64783681,3	MCF-7	breast:

Variant related genes	Relation type
ARL2	TF binding region
ENSG00000270775	Chromatin interaction
ENSG00000162298	Chromatin interaction
ENSG00000148358	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000146670	Chromatin interaction
ENSG00000162300	Chromatin interaction
ENSG00000168060	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000199879	Chromatin interaction
ENSG00000110046	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000173621	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000168070	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000229719	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000168061	Chromatin interaction
ENSG00000149792	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	esv3421449	chr11:64780801-64783349	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	34 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64780400-64782200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:64780600-64782400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:64780600-64782800	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr11:64780600-64783000	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr11:64780800-64782200	Active TSS	Brain Germinal Matrix	brain
6	chr11:64780800-64782200	Active TSS	Thymus	Thymus
7	chr11:64780800-64782400	Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr11:64780800-64782400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr11:64780800-64782400	Active TSS	Psoas Muscle	Psoas
10	chr11:64780800-64782400	Active TSS	Spleen	Spleen
11	chr11:64780800-64782600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:64780800-64782600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:64780800-64782800	Active TSS	H9 Cell Line	embryonic stem cell
14	chr11:64780800-64782800	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr11:64780800-64783000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:64781000-64782200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:64781000-64782200	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr11:64781000-64782200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:64781000-64782200	Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr11:64781000-64782200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:64781000-64782200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:64781000-64782200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:64781000-64782200	Active TSS	Brain Anterior Caudate	brain
24	chr11:64781000-64782200	Active TSS	Brain Hippocampus Middle	brain
25	chr11:64781000-64782200	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr11:64781000-64782200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:64781000-64782200	Active TSS	Fetal Brain Female	brain
28	chr11:64781000-64782200	Active TSS	Fetal Intestine Small	intestine
29	chr11:64781000-64782200	Active TSS	Pancreas	Pancrea
30	chr11:64781000-64782200	Active TSS	Placenta Amnion	Placenta Amnion
31	chr11:64781000-64782200	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr11:64781000-64782200	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr11:64781000-64782200	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr11:64781000-64782200	Active TSS	Stomach Mucosa	stomach
35	chr11:64781000-64782200	Active TSS	Osteobl	bone
36	chr11:64781000-64782400	Active TSS	H1 Cell Line	embryonic stem cell
37	chr11:64781000-64782400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:64781000-64782400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:64781000-64782400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:64781000-64782400	Active TSS	Brain Angular Gyrus	brain
41	chr11:64781000-64782400	Active TSS	Brain Substantia Nigra	brain
42	chr11:64781000-64782400	Active TSS	Colon Smooth Muscle	Colon
43	chr11:64781000-64782400	Active TSS	Esophagus	oesophagus
44	chr11:64781000-64782400	Active TSS	Fetal Lung	lung
45	chr11:64781000-64782400	Active TSS	Rectal Smooth Muscle	rectum
46	chr11:64781000-64782400	Active TSS	Right Ventricle	heart
47	chr11:64781000-64782400	Active TSS	GM12878-XiMat	blood
48	chr11:64781000-64782400	Active TSS	HepG2	liver
49	chr11:64781000-64782400	Active TSS	NHLF	lung
50	chr11:64781000-64782600	Active TSS	ES-I3 Cell Line	embryonic stem cell

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