Variant report

Variant	rs368055899
Chromosome Location	chr15:73977164-73977165
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr15:73975912-73977192	K562	blood:	n/a	n/a
2	MXI1	chr15:73977119-73977744	Hela-S3	cervix:	n/a	n/a
3	ELF1	chr15:73976885-73977264	K562	blood:	n/a	n/a
4	REST	chr15:73975721-73978190	H1-neurons	neurons:	n/a	chr15:73976590-73976603 chr15:73977028-73977041 chr15:73976851-73976864 chr15:73976907-73976920 chr15:73976087-73976096
5	POLR2A	chr15:73976244-73977474	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr15:73975950-73977872	H1-neurons	neurons:	n/a	n/a
7	ZBTB7A	chr15:73976759-73977807	ECC-1	luminal epithelium:	n/a	n/a
8	POLR2A	chr15:73976051-73977459	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr15:73976106-73979724	IMR90	lung:	n/a	n/a
10	CHD2	chr15:73975942-73977765	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr15:73977057-73977448	Hela-S3	cervix:	n/a	n/a
12	ELF1	chr15:73976889-73977311	HepG2	liver:	n/a	n/a
13	ELF1	chr15:73976944-73977268	HepG2	liver:	n/a	n/a
14	POLR2A	chr15:73975912-73977770	H1-neurons	neurons:	n/a	n/a
15	ELF1	chr15:73977021-73977226	K562	blood:	n/a	n/a
16	NR2F2	chr15:73976972-73977802	MCF-7	breast:	n/a	n/a
17	MXI1	chr15:73975959-73977393	HepG2	liver:	n/a	n/a
18	POLR2A	chr15:73976000-73977338	HepG2	liver:	n/a	n/a
19	SIN3AK20	chr15:73976915-73977215	H1-hESC	embryonic stem cell:	n/a	n/a
20	SMARCB1	chr15:73975754-73977778	Hela-S3	cervix:	n/a	chr15:73977729-73977738
21	POLR2A	chr15:73976533-73977427	HepG2	liver:	n/a	n/a
22	SIN3A	chr15:73975988-73977643	H1-hESC	embryonic stem cell:	n/a	chr15:73976907-73976920 chr15:73976590-73976603
23	MAX	chr15:73975966-73977772	Hela-S3	cervix:	n/a	n/a
24	MAZ	chr15:73975997-73977509	HepG2	liver:	n/a	n/a
25	POLR2A	chr15:73975986-73977396	HepG2	liver:	n/a	n/a
26	TAF1	chr15:73976688-73977720	H1-neurons	neurons:	n/a	n/a
27	MAZ	chr15:73975756-73978490	IMR90	lung:	n/a	n/a
28	ELF1	chr15:73976766-73977408	GM12878	blood:	n/a	n/a
29	SIN3AK20	chr15:73977049-73977476	PFSK-1	brain:	n/a	n/a
30	SIN3AK20	chr15:73976047-73977238	PANC-1	pancreas:	n/a	n/a
31	ZBTB7A	chr15:73976480-73977732	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr15:73976083-73977647	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTBP2	chr15:73975901-73977620	H1-hESC	embryonic stem cell:	n/a	n/a
34	ELF1	chr15:73976892-73977442	MCF-7	breast:	n/a	n/a
35	POLR2A	chr15:73977138-73977383	H1-hESC	embryonic stem cell:	n/a	n/a
36	MAZ	chr15:73975746-73977600	Hela-S3	cervix:	n/a	n/a
37	E2F6	chr15:73976957-73977690	H1-hESC	embryonic stem cell:	n/a	chr15:73977159-73977169 chr15:73977061-73977070
38	POLR2A	chr15:73975996-73977652	MCF-7	breast:	n/a	n/a
39	SIN3AK20	chr15:73975520-73978073	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:73923335..73928580-chr15:73974636..73980559,10	MCF-7	breast:
2	chr15:73976707..73977570-chr17:73266758..73267281,2	HCT-116	colon:
3	chr15:73975489..73977527-chr15:73994222..73997098,2	MCF-7	breast:
4	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
5	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
6	chr15:73976691..73979215-chr15:74216849..74218653,2	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000129038	Chromatin interaction
ENSG00000125457	Chromatin interaction
ENSG00000156642	Chromatin interaction
ENSG00000261801	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3434440	chr15:73975149-73978997	Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3341618	chr15:73975424-73978272	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73975800-73977200	Enhancers	Fetal Brain Male	brain
2	chr15:73975800-73978000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr15:73975800-73978000	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr15:73975800-73978200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr15:73975800-73978200	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr15:73976000-73977200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:73976000-73977200	Active TSS	Brain Anterior Caudate	brain
8	chr15:73976000-73977600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:73976000-73977800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:73976000-73977800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr15:73976000-73977800	Active TSS	Fetal Kidney	kidney
12	chr15:73976000-73978000	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr15:73976000-73978000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr15:73976000-73978200	Active TSS	H9 Cell Line	embryonic stem cell
15	chr15:73976000-73978200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:73976000-73978400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:73976000-73978600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:73976200-73977800	Active TSS	Gastric	stomach
19	chr15:73976200-73978000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:73976200-73978000	Active TSS	Brain Angular Gyrus	brain
21	chr15:73976200-73978000	Active TSS	Brain Germinal Matrix	brain
22	chr15:73976200-73978000	Active TSS	Brain Hippocampus Middle	brain
23	chr15:73976200-73978000	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr15:73976200-73978000	Active TSS	HSMMtube	muscle
25	chr15:73976200-73978200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:73976200-73978200	Active TSS	Aorta	Aorta
27	chr15:73976400-73977200	Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr15:73976400-73977200	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr15:73976400-73977200	Active TSS	Brain Substantia Nigra	brain
30	chr15:73976400-73977200	Active TSS	Duodenum Mucosa	Duodenum
31	chr15:73976400-73977200	Active TSS	Placenta	Placenta
32	chr15:73976400-73977200	Active TSS	Pancreas	Pancrea
33	chr15:73976400-73977200	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr15:73976400-73977200	Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr15:73976400-73977200	Active TSS	HUVEC	blood vessel
36	chr15:73976400-73977400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:73976400-73977400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:73976400-73977400	Weak transcription	Fetal Heart	heart
39	chr15:73976400-73977400	Active TSS	Fetal Intestine Small	intestine
40	chr15:73976400-73977400	Active TSS	Sigmoid Colon	Sigmoid Colon
41	chr15:73976400-73977600	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr15:73976400-73977600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:73976400-73977600	Active TSS	Liver	Liver
44	chr15:73976400-73977600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr15:73976400-73977600	Active TSS	Fetal Lung	lung
46	chr15:73976400-73977600	Active TSS	Fetal Stomach	stomach
47	chr15:73976400-73977600	Active TSS	Ovary	ovary
48	chr15:73976400-73977600	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr15:73976400-73977600	Active TSS	Rectal Smooth Muscle	rectum
50	chr15:73976400-73977600	Bivalent/Poised TSS	Thymus	Thymus

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