Variant report

Variant	rs368058210
Chromosome Location	chr4:82136386-82136387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr4:82136242-82137085	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr4:82135595-82137178	H1-hESC	embryonic stem cell:	n/a	chr4:82135828-82135840 chr4:82136488-82136497 chr4:82136296-82136305
3	E2F6	chr4:82135758-82137090	H1-hESC	embryonic stem cell:	n/a	chr4:82135828-82135840 chr4:82136488-82136497 chr4:82136296-82136305
4	FOXP2	chr4:82136070-82136528	PFSK-1	brain:	n/a	n/a
5	CTCF	chr4:82136320-82136470	AG09319	gingival:	n/a	n/a
6	POLR2A	chr4:82135724-82136432	H1-neurons	neurons:	n/a	n/a
7	SIN3A	chr4:82135663-82136935	H1-hESC	embryonic stem cell:	n/a	n/a
8	USF2	chr4:82136228-82137097	H1-hESC	embryonic stem cell:	n/a	chr4:82136322-82136338 chr4:82136362-82136378
9	MAX	chr4:82135603-82136512	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr4:82135645-82136581	H1-neurons	neurons:	n/a	n/a
11	ZNF263	chr4:82136198-82136894	HEK293-T-REx	kidney:	n/a	chr4:82136392-82136413
12	CTBP2	chr4:82135495-82136857	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr4:82136375-82136389	H1-hESC	embryonic stem cell:	n/a	n/a
14	CTCF	chr4:82136260-82136410	HMEC	breast:	n/a	n/a
15	MAZ	chr4:82135879-82137030	IMR90	lung:	n/a	n/a
16	CTCF	chr4:82136292-82136395	Fibrobl	skin:	n/a	n/a
17	BACH1	chr4:82135714-82136430	H1-hESC	embryonic stem cell:	n/a	n/a
18	MAX	chr4:82135663-82136462	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr4:82136238-82137298	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
PRKG2	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3356500	chr4:82134953-82137501	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82134200-82136600	Active TSS	NHDF-Ad	bronchial
2	chr4:82134400-82137200	Active TSS	NHLF	lung
3	chr4:82134600-82137000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
4	chr4:82134800-82136400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:82134800-82136800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:82135000-82136800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:82135200-82136400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
8	chr4:82135200-82136600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
9	chr4:82135200-82137200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
10	chr4:82135200-82137200	Active TSS	Rectal Smooth Muscle	rectum
11	chr4:82135400-82136400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
12	chr4:82135400-82136600	Active TSS	Brain Substantia Nigra	brain
13	chr4:82135400-82136600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
14	chr4:82135400-82136800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
15	chr4:82135400-82136800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr4:82135400-82136800	Flanking Bivalent TSS/Enh	HMEC	breast
17	chr4:82135400-82136800	Bivalent/Poised TSS	NHEK	skin
18	chr4:82135400-82137000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
19	chr4:82135400-82137000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:82135400-82137000	Active TSS	Brain Angular Gyrus	brain
21	chr4:82135400-82137000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
22	chr4:82135400-82137000	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr4:82135400-82137000	Active TSS	Right Atrium	heart
24	chr4:82135400-82137000	Bivalent/Poised TSS	Osteobl	bone
25	chr4:82135400-82137200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
26	chr4:82135400-82137200	Active TSS	Brain Anterior Caudate	brain
27	chr4:82135400-82137400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr4:82135400-82137400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr4:82135400-82137400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:82135600-82136400	Bivalent/Poised TSS	Fetal Stomach	stomach
31	chr4:82135600-82136400	Flanking Active TSS	Ovary	ovary
32	chr4:82135600-82136600	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:82135600-82136600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:82135600-82136600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr4:82135600-82136600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:82135600-82136600	Bivalent/Poised TSS	Fetal Brain Female	brain
37	chr4:82135600-82136600	Bivalent/Poised TSS	NH-A	brain
38	chr4:82135600-82136800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr4:82135600-82136800	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr4:82135600-82136800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:82135600-82136800	Bivalent Enhancer	Placenta	Placenta
42	chr4:82135600-82136800	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
43	chr4:82135600-82137000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr4:82135600-82137000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
45	chr4:82135600-82137000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:82135600-82137000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:82135600-82137000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
48	chr4:82135600-82137000	Active TSS	Aorta	Aorta
49	chr4:82135600-82137000	Active TSS	Colon Smooth Muscle	Colon
50	chr4:82135600-82137000	Bivalent/Poised TSS	A549	lung

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