Variant report

Variant	rs368077807
Chromosome Location	chr6:13704963-13704964
allele	-/AT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13656880..13659020-chr6:13704232..13705741,2	K562	blood:
2	chr6:13677684..13681560-chr6:13703690..13707660,4	K562	blood:
3	chr6:13700159..13702391-chr6:13702424..13706464,3	MCF-7	breast:
4	chr6:13678691..13681560-chr6:13700664..13706580,5	K562	blood:
5	chr6:13686918..13689189-chr6:13703638..13706243,2	K562	blood:
6	chr6:13703743..13705757-chr6:13712344..13714353,2	MCF-7	breast:
7	chr6:13571943..13574615-chr6:13703735..13706256,3	K562	blood:
8	chr6:13571943..13574615-chr6:13703735..13705553,2	K562	blood:
9	chr6:13703438..13706019-chr6:13706100..13707717,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction
ENSG00000252966	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv883451	chr6:13704341-13728670	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv883452	chr6:13704341-13733565	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13679000-13708400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:13681000-13708600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:13686400-13709600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:13690400-13707600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:13690600-13707600	Weak transcription	Fetal Kidney	kidney
6	chr6:13690600-13708400	Weak transcription	Aorta	Aorta
7	chr6:13691200-13708000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:13692000-13707600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:13692200-13708400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:13692800-13708400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:13694000-13706800	Weak transcription	Fetal Intestine Small	intestine
12	chr6:13694600-13706400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:13695000-13708000	Weak transcription	Hela-S3	cervix
14	chr6:13695000-13708200	Weak transcription	Fetal Brain Female	brain
15	chr6:13696200-13708200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:13696200-13708200	Weak transcription	Brain Substantia Nigra	brain
17	chr6:13696200-13708200	Weak transcription	Fetal Brain Male	brain
18	chr6:13696200-13708200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:13696400-13708000	Weak transcription	Fetal Lung	lung
20	chr6:13696600-13708400	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:13697200-13705800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:13697200-13708000	Weak transcription	Brain Germinal Matrix	brain
23	chr6:13697200-13708000	Weak transcription	Fetal Intestine Large	intestine
24	chr6:13697200-13708400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:13697200-13708400	Weak transcription	NH-A	brain
26	chr6:13698200-13708000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:13698600-13708200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:13698600-13708400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:13699200-13707800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:13699200-13708200	Weak transcription	HSMM	muscle
31	chr6:13699200-13708400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:13700600-13708400	Weak transcription	Placenta	Placenta
33	chr6:13700800-13707800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:13700800-13708400	Weak transcription	Thymus	Thymus
35	chr6:13700800-13708600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:13700800-13710400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:13701000-13708600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:13701400-13708200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:13702600-13705200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr6:13702600-13705400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:13702800-13706200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:13703000-13705000	Enhancers	Primary B cells from peripheral blood	blood
43	chr6:13703000-13705200	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr6:13703000-13706000	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr6:13703200-13705200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr6:13703200-13705400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:13703200-13705400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:13703200-13706000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr6:13703400-13705200	Enhancers	HUVEC	blood vessel
50	chr6:13703400-13708400	Weak transcription	Rectal Smooth Muscle	rectum

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