Variant report

Variant	rs368086118
Chromosome Location	chr3:160818359-160818360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160816932..160819441-chr3:160937058..160940131,3	MCF-7	breast:
2	chr3:160813033..160824577-chr3:161083489..161092050,35	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction
ENSG00000169251	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv877704	chr3:160806859-160836006	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877705	chr3:160818188-160836006	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160780800-160821400	Weak transcription	Fetal Brain Male	brain
2	chr3:160781800-160822000	Weak transcription	Thymus	Thymus
3	chr3:160787000-160822000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:160787200-160818800	Weak transcription	Brain Germinal Matrix	brain
5	chr3:160789600-160818800	Weak transcription	Esophagus	oesophagus
6	chr3:160796200-160821800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:160797000-160822000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:160798600-160821800	Weak transcription	Brain Angular Gyrus	brain
9	chr3:160799800-160821800	Weak transcription	NHLF	lung
10	chr3:160799800-160822000	Weak transcription	HMEC	breast
11	chr3:160800200-160820000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:160800400-160818800	Weak transcription	Gastric	stomach
13	chr3:160800400-160822200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:160800400-160822400	Weak transcription	Spleen	Spleen
15	chr3:160801000-160821800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:160801200-160822000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:160801600-160818800	Weak transcription	Placenta	Placenta
18	chr3:160801600-160821800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr3:160802600-160821400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:160802600-160822000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:160802600-160822400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:160802800-160822000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:160803400-160819200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:160803400-160822000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:160803800-160822000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:160804400-160822000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:160804400-160822000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:160804600-160820400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:160804600-160821800	Weak transcription	Brain Substantia Nigra	brain
30	chr3:160804600-160821800	Weak transcription	HUVEC	blood vessel
31	chr3:160804600-160822200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:160805800-160818800	Weak transcription	Lung	lung
33	chr3:160807000-160818800	Weak transcription	Fetal Kidney	kidney
34	chr3:160807800-160818800	Weak transcription	Adipose Nuclei	Adipose
35	chr3:160807800-160820200	Weak transcription	Pancreas	Pancrea
36	chr3:160809000-160821800	Weak transcription	NHDF-Ad	bronchial
37	chr3:160809000-160822200	Weak transcription	Psoas Muscle	Psoas
38	chr3:160813400-160818800	Weak transcription	Right Atrium	heart
39	chr3:160813400-160822000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:160813800-160818800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:160814000-160821600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:160814600-160820800	Strong transcription	Fetal Muscle Leg	muscle
43	chr3:160815200-160820800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:160815200-160820800	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr3:160815600-160821400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:160815800-160820800	Strong transcription	Fetal Lung	lung
47	chr3:160816000-160819800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:160816000-160820000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:160816000-160821000	Strong transcription	Fetal Muscle Trunk	muscle
50	chr3:160816000-160822200	Weak transcription	H9 Cell Line	embryonic stem cell

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