Variant report

Variant	rs368113395
Chromosome Location	chr10:95852280-95852281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95831400-95864200	Weak transcription	Colonic Mucosa	Colon
2	chr10:95836600-95861400	Weak transcription	Pancreas	Pancrea
3	chr10:95836600-95863400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:95837600-95876000	Weak transcription	Fetal Intestine Large	intestine
5	chr10:95843400-95864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:95845400-95852600	Weak transcription	HSMMtube	muscle
7	chr10:95845400-95860600	Weak transcription	Spleen	Spleen
8	chr10:95845400-95867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:95845600-95853400	Weak transcription	Lung	lung
10	chr10:95847800-95860600	Weak transcription	Fetal Intestine Small	intestine
11	chr10:95849000-95852400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:95849000-95862200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:95849000-95862400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:95849200-95852600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:95849200-95852600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:95849200-95852600	Weak transcription	A549	lung
17	chr10:95849200-95852600	Weak transcription	Osteobl	bone
18	chr10:95849200-95853000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:95849200-95858600	Weak transcription	Fetal Brain Female	brain
20	chr10:95849200-95858600	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:95849200-95863200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:95850400-95852800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:95850400-95863400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:95850600-95854400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:95850600-95854400	Weak transcription	Left Ventricle	heart
26	chr10:95850600-95858400	Weak transcription	Fetal Lung	lung
27	chr10:95850800-95857400	Weak transcription	Right Atrium	heart
28	chr10:95851200-95852800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:95851200-95853000	Weak transcription	Fetal Stomach	stomach
30	chr10:95851200-95853200	Weak transcription	Ovary	ovary
31	chr10:95851200-95853400	Weak transcription	Aorta	Aorta
32	chr10:95851400-95853400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:95851400-95857800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:95851600-95854800	Weak transcription	Brain Anterior Caudate	brain
35	chr10:95851800-95853000	Weak transcription	Adipose Nuclei	Adipose
36	chr10:95851800-95854200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:95852200-95854200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links