Variant report

Variant	rs368125825
Chromosome Location	chr3:20134294-20134295
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:20123056..20125408-chr3:20133416..20135559,2	MCF-7	breast:
2	chr3:20133592..20135375-chr3:20142503..20144573,2	K562	blood:
3	chr3:20079315..20082168-chr3:20133365..20135134,2	K562	blood:

Variant related genes	Relation type
ENSG00000114166	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825914	chr3:19549859-20137270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1833006	chr3:19562271-20389045	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1010613	chr3:19942032-20461486	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv1826030	chr3:19972766-20170581	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv1826830	chr3:19982972-20632072	Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1829542	chr3:20009231-20384627	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv834627	chr3:20068115-20227975	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv433359	chr3:20090908-20587572	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv470450	chr3:20096735-20389045	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv1001006	chr3:20110743-20752628	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv536512	chr3:20110743-20752628	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	esv1829018	chr3:20116077-20596244	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
13	esv1827700	chr3:20119716-20489086	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	esv1830036	chr3:20121828-20278275	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
15	esv1830599	chr3:20121828-20375643	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
16	nsv3719	chr3:20133243-20150202	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20102800-20136800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr3:20116400-20194800	Weak transcription	NHDF-Ad	bronchial
3	chr3:20123000-20137000	Weak transcription	Spleen	Spleen
4	chr3:20123000-20138400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:20123000-20140800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:20123000-20153000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:20123200-20136800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:20123200-20136800	Weak transcription	Brain Angular Gyrus	brain
9	chr3:20123200-20136800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:20123200-20137000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:20123200-20137200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:20123200-20137200	Weak transcription	Esophagus	oesophagus
13	chr3:20123200-20137200	Weak transcription	Fetal Heart	heart
14	chr3:20123200-20137200	Weak transcription	Left Ventricle	heart
15	chr3:20123200-20137200	Weak transcription	Psoas Muscle	Psoas
16	chr3:20123200-20137200	Weak transcription	Right Ventricle	heart
17	chr3:20123200-20137400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:20123200-20137400	Weak transcription	Gastric	stomach
19	chr3:20123200-20137400	Weak transcription	Pancreas	Pancrea
20	chr3:20123200-20138600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:20123200-20141000	Weak transcription	Stomach Mucosa	stomach
22	chr3:20123200-20153200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:20128200-20136000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:20128200-20136200	Weak transcription	Fetal Thymus	thymus
25	chr3:20128200-20136400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr3:20128200-20137400	Weak transcription	Aorta	Aorta
27	chr3:20128200-20137400	Weak transcription	Lung	lung
28	chr3:20128200-20175800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:20129600-20137400	Weak transcription	Ovary	ovary
30	chr3:20131200-20135800	Weak transcription	Thymus	Thymus
31	chr3:20131200-20137000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr3:20131200-20140200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:20131400-20137200	Weak transcription	Fetal Intestine Small	intestine
34	chr3:20131400-20137200	Weak transcription	Fetal Stomach	stomach
35	chr3:20131400-20140800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:20131600-20136800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr3:20131600-20137000	Weak transcription	Adipose Nuclei	Adipose
38	chr3:20131800-20135000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr3:20131800-20136400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr3:20131800-20153000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr3:20132000-20135800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr3:20132000-20136800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr3:20132200-20134600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr3:20132200-20135200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr3:20132200-20135800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:20132200-20136600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr3:20132200-20136800	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:20132200-20136800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr3:20132200-20137000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr3:20132200-20137000	Weak transcription	Fetal Lung	lung

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