Variant report

Variant	rs368144040
Chromosome Location	chr12:66663510-66663511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:66562059..66564865-chr12:66662952..66665782,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155957	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv899216	chr12:66563835-66716844	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv976747	chr12:66663300-66669568	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66658200-66663600	Weak transcription	Thymus	Thymus
2	chr12:66660800-66663800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr12:66661000-66664800	Enhancers	Primary T cells from cord blood	blood
4	chr12:66661200-66663600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:66661200-66663600	Enhancers	GM12878-XiMat	blood
6	chr12:66661200-66664600	Enhancers	Primary B cells from cord blood	blood
7	chr12:66661200-66666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:66661600-66665600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr12:66662000-66663600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr12:66662000-66663800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr12:66662000-66663800	Enhancers	Fetal Thymus	thymus
12	chr12:66662000-66664000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr12:66662000-66664600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr12:66662000-66664600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr12:66662200-66663600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr12:66662400-66664800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr12:66662600-66664600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr12:66662800-66663800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr12:66662800-66663800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:66663000-66663600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr12:66663200-66663600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:66663200-66663600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr12:66663200-66663800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr12:66663200-66663800	Enhancers	Brain Hippocampus Middle	brain
25	chr12:66663200-66664000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr12:66663200-66665800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr12:66663400-66663600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr12:66663400-66663600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr12:66663400-66663600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr12:66663400-66663600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr12:66663400-66663800	Enhancers	H9 Cell Line	embryonic stem cell
32	chr12:66663400-66663800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr12:66663400-66663800	Enhancers	Liver	Liver
34	chr12:66663400-66663800	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr12:66663400-66664000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr12:66663400-66664200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr12:66663400-66664400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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