Variant report

Variant	rs368154990
Chromosome Location	chr1:151105498-151105499
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr1:151105411-151106236	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr1:151103259-151106011	H1-hESC	embryonic stem cell:	n/a	chr1:151103613-151103620 chr1:151103613-151103620 chr1:151103612-151103621 chr1:151103612-151103624 chr1:151103969-151103979 chr1:151103613-151103620
3	BACH1	chr1:151105430-151105722	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAX	chr1:151105069-151106289	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:151103786..151106331-chr1:151117499..151120768,3	MCF-7	breast:
2	chr1:151104790..151107252-chr1:151107376..151109485,2	K562	blood:
3	chr1:151104617..151106812-chr1:151117447..151119044,2	MCF-7	breast:
4	chr1:151104720..151106721-chr1:151225505..151227550,2	MCF-7	breast:

Variant related genes	Relation type
SEMA6C	TF binding region
ENSG00000261168	TF binding region
ENSG00000143434	Chromatin interaction
ENSG00000159352	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
5	nsv872422	chr1:151098077-151115186	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv872423	chr1:151100612-151115997	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv3399787	chr1:151104353-151106901	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151061800-151105600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:151079800-151106200	Weak transcription	HSMMtube	muscle
3	chr1:151079800-151114800	Weak transcription	HSMM	muscle
4	chr1:151097800-151105600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:151097800-151106000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:151103200-151106000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr1:151103400-151105800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr1:151103400-151105800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:151103400-151105800	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr1:151103400-151105800	Active TSS	Ovary	ovary
11	chr1:151103400-151106000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr1:151103400-151106200	Active TSS	H9 Cell Line	embryonic stem cell
13	chr1:151103400-151106400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr1:151103600-151106200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chr1:151103600-151106200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
16	chr1:151104000-151106000	Enhancers	Pancreas	Pancrea
17	chr1:151104000-151114800	Weak transcription	Psoas Muscle	Psoas
18	chr1:151104200-151106000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:151104200-151106200	Enhancers	Fetal Brain Male	brain
20	chr1:151104200-151107800	Weak transcription	Liver	Liver
21	chr1:151104400-151105600	Active TSS	Gastric	stomach
22	chr1:151104400-151105600	Weak transcription	Left Ventricle	heart
23	chr1:151104400-151105800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr1:151104400-151106000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr1:151104400-151106200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
26	chr1:151104400-151106600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:151104400-151106800	Weak transcription	Brain Angular Gyrus	brain
28	chr1:151104400-151107600	Weak transcription	GM12878-XiMat	blood
29	chr1:151104400-151110400	Weak transcription	NHLF	lung
30	chr1:151104400-151111200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:151104400-151116600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr1:151104400-151117000	Weak transcription	Fetal Kidney	kidney
33	chr1:151104400-151118000	Weak transcription	Aorta	Aorta
34	chr1:151104600-151106000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr1:151104600-151106200	Weak transcription	Brain Hippocampus Middle	brain
36	chr1:151104600-151106200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr1:151104600-151106200	Weak transcription	Fetal Lung	lung
38	chr1:151104600-151106600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:151104600-151106600	Weak transcription	Brain Anterior Caudate	brain
40	chr1:151104600-151106600	Weak transcription	HUVEC	blood vessel
41	chr1:151104600-151107600	Weak transcription	Brain Substantia Nigra	brain
42	chr1:151104600-151108200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:151104600-151109000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr1:151104600-151117400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr1:151104600-151118200	Weak transcription	Primary T cells from cord blood	blood
46	chr1:151104800-151105600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:151104800-151105600	Enhancers	Fetal Muscle Leg	muscle
48	chr1:151104800-151105600	Strong transcription	Right Ventricle	heart
49	chr1:151104800-151105600	Weak transcription	Spleen	Spleen
50	chr1:151104800-151106000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell

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