Variant report

Variant	rs368163540
Chromosome Location	chr17:20824307-20824308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SRF	chr17:20824061-20824478	ECC-1	luminal epithelium:	n/a	n/a
2	TCF12	chr17:20823931-20824694	SK-N-SH	brain:	n/a	n/a
3	PBX3	chr17:20823893-20824502	SK-N-SH	brain:	n/a	n/a
4	EP300	chr17:20824077-20824482	Hela-S3	cervix:	n/a	n/a
5	SMC3	chr17:20824301-20824378	HepG2	liver:	n/a	n/a
6	POLR2A	chr17:20823731-20824519	SK-N-SH	brain:	n/a	n/a
7	STAT3	chr17:20824143-20824455	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000233098	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916440	chr17:20171468-20839266	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv2751619	chr17:20462908-20914156	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3361931	chr17:20539962-20845258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv3330516	chr17:20572433-20862663	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1064365	chr17:20801739-20890716	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv949097	chr17:20801739-21406355	Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
7	nsv574597	chr17:20802778-20872331	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv527161	chr17:20814766-20872331	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv457706	chr17:20814766-20872331	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv574598	chr17:20814766-20872331	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv17086	chr17:20823000-20825771	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3314605	chr17:20823150-20825868	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3314606	chr17:20823197-20825844	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv3314609	chr17:20823215-20825825	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3314608	chr17:20823220-20825797	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv3314604	chr17:20823273-20825766	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv3314610	chr17:20823287-20825763	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20812200-20824800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:20812600-20830800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr17:20820200-20827800	Weak transcription	Right Atrium	heart
4	chr17:20820400-20825600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr17:20820400-20825600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr17:20820400-20825600	Weak transcription	NHEK	skin
7	chr17:20820400-20827200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr17:20822800-20824400	Enhancers	Brain Cingulate Gyrus	brain
9	chr17:20823000-20824400	Enhancers	Brain Anterior Caudate	brain
10	chr17:20823000-20824600	Enhancers	Brain Hippocampus Middle	brain
11	chr17:20823200-20824600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr17:20823200-20825600	Enhancers	NHDF-Ad	bronchial
13	chr17:20823200-20826000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr17:20823200-20826600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr17:20823400-20826400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr17:20823400-20827600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:20823400-20831600	Weak transcription	Colon Smooth Muscle	Colon
18	chr17:20823400-20833600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr17:20823600-20824400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr17:20823600-20824600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr17:20823600-20824600	Enhancers	HSMM	muscle
22	chr17:20823800-20824600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr17:20823800-20824600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr17:20823800-20824600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr17:20823800-20824800	Enhancers	A549	lung
26	chr17:20823800-20824800	Flanking Active TSS	NH-A	brain
27	chr17:20823800-20825000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr17:20823800-20825000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr17:20823800-20825600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr17:20824000-20824600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr17:20824000-20824600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr17:20824000-20824800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr17:20824000-20826200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr17:20824200-20824400	Enhancers	HSMMtube	muscle
35	chr17:20824200-20824400	Flanking Active TSS	Osteobl	bone
36	chr17:20824200-20824600	Enhancers	NHLF	lung
37	chr17:20824200-20825000	Weak transcription	Fetal Stomach	stomach
38	chr17:20824200-20825000	Active TSS	Ovary	ovary
39	chr17:20824200-20825600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr17:20824200-20825600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr17:20824200-20825800	Enhancers	Hela-S3	cervix
42	chr17:20824200-20826000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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