The 2.0 version of rSNPBase

Variant report

Variant rs368178200
Chromosome Location chr15:41865982-41865983
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:41852200-41877400 Weak transcription Aorta Aorta
2 chr15:41852400-41877200 Weak transcription Colon Smooth Muscle Colon
3 chr15:41852600-41877400 Weak transcription HMEC breast
4 chr15:41852800-41877400 Weak transcription NHEK skin
5 chr15:41853200-41872600 Weak transcription Hela-S3 cervix
6 chr15:41853400-41870600 Weak transcription Stomach Mucosa stomach
7 chr15:41854000-41871400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr15:41854200-41877000 Weak transcription Fetal Brain Male brain
9 chr15:41855400-41877000 Weak transcription Breast Myoepithelial Primary Cells Breast
10 chr15:41855400-41877200 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr15:41859000-41866200 Weak transcription NHDF-Ad bronchial
12 chr15:41859000-41869000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr15:41859600-41868000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr15:41860200-41866200 Strong transcription Esophagus oesophagus
15 chr15:41860800-41871800 Strong transcription Brain Germinal Matrix brain
16 chr15:41861000-41877200 Weak transcription HUVEC blood vessel
17 chr15:41861200-41867400 Weak transcription Left Ventricle heart
18 chr15:41861200-41870000 Strong transcription Cortex derived primary cultured neurospheres brain
19 chr15:41861200-41870000 Weak transcription HSMMtube muscle
20 chr15:41861200-41871200 Weak transcription Small Intestine intestine
21 chr15:41861200-41877000 Weak transcription Placenta Amnion Placenta Amnion
22 chr15:41861400-41867400 Weak transcription Right Ventricle heart
23 chr15:41861400-41868000 Strong transcription iPS-15b Cell Line embryonic stem cell
24 chr15:41861400-41870000 Strong transcription Fetal Muscle Leg muscle
25 chr15:41861400-41870400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr15:41861400-41870400 Strong transcription Fetal Stomach stomach
27 chr15:41861400-41870600 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr15:41861400-41870600 Strong transcription Fetal Muscle Trunk muscle
29 chr15:41861400-41870800 Strong transcription HUES6 Cell Line embryonic stem cell
30 chr15:41861400-41871000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr15:41861400-41871400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr15:41861400-41871400 Strong transcription HUES48 Cell Line embryonic stem cell
33 chr15:41861400-41873200 Weak transcription K562 blood
34 chr15:41861600-41868000 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr15:41861600-41868200 Strong transcription iPS-20b Cell Line embryonic stem cell
36 chr15:41861600-41871400 Strong transcription H9 Cell Line embryonic stem cell
37 chr15:41861600-41871400 Strong transcription HUES64 Cell Line embryonic stem cell
38 chr15:41861800-41866200 Strong transcription Placenta Placenta
39 chr15:41861800-41868400 Strong transcription Primary hematopoietic stem cells short term culture blood
40 chr15:41861800-41870000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr15:41861800-41870200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr15:41861800-41870200 Strong transcription Spleen Spleen
43 chr15:41861800-41871000 Strong transcription Fetal Adrenal Gland Adrenal Gland
44 chr15:41861800-41871000 Strong transcription Fetal Intestine Large intestine
45 chr15:41862000-41868200 Strong transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr15:41862000-41870400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr15:41862000-41870600 Strong transcription H1 Cell Line embryonic stem cell
48 chr15:41862000-41870800 Strong transcription Fetal Intestine Small intestine
49 chr15:41862000-41871200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr15:41862200-41867800 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015