Variant report

Variant	rs368242082
Chromosome Location	chr5:111507077-111507078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111504901..111509125-chr5:111533307..111535722,3	K562	blood:
2	chr5:111505441..111507205-chr5:111752251..111753989,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv948869	chr5:111476404-111695183	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv519077	chr5:111506751-111519018	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111497600-111538600	Weak transcription	Small Intestine	intestine
2	chr5:111498200-111518800	Weak transcription	Right Atrium	heart
3	chr5:111498800-111507600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:111499600-111507200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:111499600-111510800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:111499800-111510600	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:111500000-111510600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:111500200-111510600	Weak transcription	Brain Anterior Caudate	brain
9	chr5:111500400-111510600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:111500600-111508800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:111500800-111510600	Weak transcription	NHEK	skin
12	chr5:111501400-111546400	Weak transcription	Spleen	Spleen
13	chr5:111502200-111510600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:111502200-111510600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:111502200-111510600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:111502200-111511000	Weak transcription	Brain Substantia Nigra	brain
17	chr5:111502400-111510600	Weak transcription	Fetal Heart	heart
18	chr5:111502400-111510600	Weak transcription	K562	blood
19	chr5:111502400-111510600	Weak transcription	NH-A	brain
20	chr5:111502400-111518800	Weak transcription	Pancreas	Pancrea
21	chr5:111502400-111546400	Weak transcription	Aorta	Aorta
22	chr5:111502600-111509600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr5:111502600-111510600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:111502600-111510600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:111502600-111510600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr5:111502600-111510600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:111502600-111510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:111502600-111510600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr5:111502800-111507200	Weak transcription	Brain Germinal Matrix	brain
30	chr5:111502800-111509800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr5:111502800-111510600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr5:111502800-111546000	Weak transcription	Ovary	ovary
33	chr5:111503000-111510400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:111503000-111510600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr5:111503400-111508600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr5:111503600-111510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:111503600-111510600	Weak transcription	Brain Angular Gyrus	brain
38	chr5:111503600-111510600	Weak transcription	Fetal Intestine Small	intestine
39	chr5:111503600-111510600	Weak transcription	Dnd41	blood
40	chr5:111503600-111519000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr5:111503600-111527800	Weak transcription	Psoas Muscle	Psoas
42	chr5:111503600-111537400	Weak transcription	Lung	lung
43	chr5:111503800-111508600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr5:111503800-111508800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr5:111503800-111510600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr5:111503800-111510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:111503800-111510600	Weak transcription	GM12878-XiMat	blood
48	chr5:111503800-111510600	Weak transcription	Osteobl	bone
49	chr5:111504000-111509800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr5:111504000-111510200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links