Variant report

Variant	rs368280361
Chromosome Location	chr5:145214793-145214794
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:231555816..231556662-chr5:145214604..145215280,2	HCT-116	colon:
2	chr5:145213194..145215106-chr5:145826697..145828661,2	K562	blood:
3	chr17:46125185..46125891-chr5:145214643..145215348,2	HCT-116	colon:
4	chr5:145213219..145215164-chr5:145314647..145317040,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRELID2-5	chr5:145214740-145214796	NONHSAT104387

Variant related genes	Relation type
ENSG00000156463	Chromatin interaction
ENSG00000082641	Chromatin interaction
ENSG00000263412	Chromatin interaction
ENSG00000135766	Chromatin interaction
ENSG00000113649	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329004	chr5:145213984-145216532	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145212800-145215400	Active TSS	Colonic Mucosa	Colon
2	chr5:145212800-145216000	Active TSS	Rectal Smooth Muscle	rectum
3	chr5:145213000-145215400	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr5:145213200-145215600	Active TSS	NHLF	lung
5	chr5:145213400-145214800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:145213400-145215400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:145213400-145215400	Active TSS	Fetal Intestine Large	intestine
8	chr5:145213400-145215400	Active TSS	Fetal Intestine Small	intestine
9	chr5:145213800-145214800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:145214000-145214800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:145214000-145214800	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr5:145214000-145214800	Flanking Active TSS	NHEK	skin
13	chr5:145214000-145215200	Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr5:145214000-145215200	Active TSS	NH-A	brain
15	chr5:145214000-145215200	Active TSS	NHDF-Ad	bronchial
16	chr5:145214000-145215400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:145214000-145215600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:145214000-145215600	Active TSS	Ovary	ovary
19	chr5:145214000-145215800	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr5:145214200-145214800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr5:145214200-145214800	Flanking Active TSS	Liver	Liver
22	chr5:145214200-145214800	Active TSS	Brain Germinal Matrix	brain
23	chr5:145214200-145215200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr5:145214200-145215200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:145214200-145215200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:145214200-145215200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr5:145214200-145215200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr5:145214200-145215200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr5:145214200-145215200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:145214200-145215200	Active TSS	Brain Angular Gyrus	brain
31	chr5:145214200-145215200	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr5:145214200-145215200	Active TSS	Duodenum Mucosa	Duodenum
33	chr5:145214200-145215200	Active TSS	Fetal Muscle Trunk	muscle
34	chr5:145214200-145215200	Active TSS	Fetal Stomach	stomach
35	chr5:145214200-145215200	Active TSS	Lung	lung
36	chr5:145214200-145215200	Active TSS	Placenta Amnion	Placenta Amnion
37	chr5:145214200-145215200	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr5:145214200-145215200	Active TSS	Right Ventricle	heart
39	chr5:145214200-145215200	Active TSS	GM12878-XiMat	blood
40	chr5:145214200-145215200	Active TSS	HSMM	muscle
41	chr5:145214200-145215400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
42	chr5:145214200-145215400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
43	chr5:145214200-145215400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr5:145214200-145215400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr5:145214200-145215400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr5:145214200-145215400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr5:145214200-145215400	Active TSS	Brain Substantia Nigra	brain
48	chr5:145214200-145215400	Active TSS	Left Ventricle	heart
49	chr5:145214200-145215400	Active TSS	Pancreas	Pancrea
50	chr5:145214200-145215400	Active TSS	Right Atrium	heart

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