Variant report

Variant	rs368308708
Chromosome Location	chr11:18727703-18727704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:18726724-18728916	SK-N-SH	brain:	n/a	n/a
2	HMGN3	chr11:18727320-18727767	K562	blood:	n/a	n/a
3	MAX	chr11:18727211-18727800	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000254966	TF binding region
IGSF22	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv983163	chr11:18702181-18736146	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv897028	chr11:18714623-18770822	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv525192	chr11:18722791-18793360	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3342768	chr11:18726926-18729124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18726800-18727800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
2	chr11:18726800-18727800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
3	chr11:18726800-18728600	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr11:18727000-18727800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:18727000-18727800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:18727000-18727800	Flanking Active TSS	Colonic Mucosa	Colon
7	chr11:18727000-18727800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
8	chr11:18727000-18728000	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr11:18727000-18728800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr11:18727000-18728800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:18727000-18728800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:18727000-18728800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:18727000-18728800	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr11:18727000-18729000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr11:18727000-18729000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
17	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
18	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:18727200-18727800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:18727200-18727800	Flanking Active TSS	Esophagus	oesophagus
22	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
23	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
24	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
25	chr11:18727200-18727800	Flanking Active TSS	Left Ventricle	heart
26	chr11:18727200-18727800	Flanking Active TSS	Lung	lung
27	chr11:18727200-18727800	Flanking Active TSS	Pancreas	Pancrea
28	chr11:18727200-18727800	Flanking Active TSS	Psoas Muscle	Psoas
29	chr11:18727200-18727800	Flanking Active TSS	Right Ventricle	heart
30	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
31	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
32	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	HMEC	breast
33	chr11:18727200-18727800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
34	chr11:18727200-18728000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
35	chr11:18727200-18728400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:18727200-18728600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
37	chr11:18727200-18728600	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr11:18727200-18728600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:18727200-18728800	Active TSS	Fetal Kidney	kidney
40	chr11:18727200-18730400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:18727400-18727800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:18727400-18727800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
43	chr11:18727400-18727800	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:18727400-18727800	Flanking Bivalent TSS/Enh	Placenta	Placenta
45	chr11:18727400-18727800	Flanking Active TSS	Spleen	Spleen
46	chr11:18727400-18728000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:18727400-18728200	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr11:18727400-18728200	Active TSS	Fetal Stomach	stomach
49	chr11:18727400-18728200	Bivalent/Poised TSS	HSMM	muscle
50	chr11:18727400-18728400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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