Variant report

Variant	rs368347982
Chromosome Location	chr9:96340245-96340246
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:101964530..101966057-chr9:96338377..96341052,2	MCF-7	breast:
2	chr9:96207292..96208805-chr9:96339241..96341688,2	MCF-7	breast:
3	chr9:95818234..95820974-chr9:96339140..96341685,2	MCF-7	breast:
4	chr15:64672393..64674955-chr9:96338463..96341441,2	MCF-7	breast:
5	chr9:96213158..96214882-chr9:96338001..96341678,3	K562	blood:
6	chr9:96211528..96214948-chr9:96337573..96343441,10	MCF-7	breast:
7	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:
8	chr9:96298295..96300963-chr9:96339660..96341258,2	MCF-7	breast:
9	chr9:95895154..95898000-chr9:96338001..96340609,3	MCF-7	breast:
10	chr9:95856094..95858375-chr9:96337008..96340445,3	MCF-7	breast:
11	chr8:144819610..144821971-chr9:96337841..96340310,2	MCF-7	breast:
12	chr9:96289339..96291734-chr9:96339194..96341014,2	MCF-7	breast:
13	chr9:96328414..96329044-chr9:96339964..96340763,2	MCF-7	breast:
14	chr9:95894803..95898160-chr9:96337820..96340366,3	MCF-7	breast:
15	chr9:96323290..96325963-chr9:96339113..96341830,2	MCF-7	breast:
16	chr9:96214499..96217099-chr9:96338317..96340265,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166803	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000164924	Chromatin interaction
ENSG00000131669	Chromatin interaction
ENSG00000203499	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041803	chr9:96299639-96342013	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv824985	chr9:96337735-96340349	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	esv3359621	chr9:96337881-96340629	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	esv3422729	chr9:96337956-96340504	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96337600-96340400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr9:96337600-96340400	Active TSS	Fetal Kidney	kidney
3	chr9:96337600-96340600	Active TSS	HSMMtube	muscle
4	chr9:96337600-96341000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr9:96337800-96340400	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr9:96338000-96341000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:96339400-96340400	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr9:96339400-96340600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:96339600-96340400	Flanking Active TSS	Spleen	Spleen
10	chr9:96339600-96340600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:96339600-96340600	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr9:96339600-96340600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr9:96339600-96340600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:96339600-96340800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr9:96339800-96340400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:96339800-96340400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
17	chr9:96339800-96340400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr9:96339800-96340400	Flanking Active TSS	Primary B cells from peripheral blood	blood
19	chr9:96339800-96340400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr9:96339800-96340400	Flanking Active TSS	Liver	Liver
21	chr9:96339800-96340400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr9:96339800-96340400	Flanking Active TSS	K562	blood
23	chr9:96339800-96340400	Flanking Active TSS	Osteobl	bone
24	chr9:96339800-96340600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:96339800-96340600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr9:96339800-96340600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr9:96339800-96340600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr9:96339800-96340600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
29	chr9:96339800-96340600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr9:96339800-96340600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr9:96339800-96340600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:96339800-96340600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr9:96339800-96340600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr9:96339800-96340600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:96339800-96340600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:96339800-96340600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:96339800-96340600	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr9:96339800-96340600	Flanking Active TSS	Colonic Mucosa	Colon
39	chr9:96339800-96340600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
40	chr9:96339800-96340600	Flanking Active TSS	Fetal Muscle Trunk	muscle
41	chr9:96339800-96340600	Flanking Active TSS	Fetal Stomach	stomach
42	chr9:96339800-96340600	Flanking Active TSS	Fetal Thymus	thymus
43	chr9:96339800-96340600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr9:96339800-96340600	Flanking Active TSS	Right Atrium	heart
45	chr9:96339800-96340600	Flanking Active TSS	HMEC	breast
46	chr9:96339800-96340600	Flanking Active TSS	NH-A	brain
47	chr9:96339800-96340600	Flanking Active TSS	NHEK	skin
48	chr9:96339800-96340800	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr9:96339800-96340800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr9:96339800-96340800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links