Variant report

Variant	rs368352
Chromosome Location	chr5:112838767-112838768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs164253	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs171181	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs182987	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2416282	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2431548	0.83[AMR][1000 genomes]
rs2434664	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2434665	0.82[AMR][1000 genomes]
rs26983	0.84[AFR][1000 genomes]
rs2914153	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2914252	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348927	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs348933	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs348949	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs348950	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs348953	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs348959	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs423089	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs675353	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112827200-112840400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112838000-112839000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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