Variant report

Variant	rs368395431
Chromosome Location	chr15:73343970-73343971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:73343803-73345022	A549	lung:	n/a	chr15:73344252-73344261 chr15:73344369-73344379 chr15:73344072-73344082
2	REST	chr15:73343338-73346187	H1-neurons	neurons:	n/a	chr15:73344978-73344996 chr15:73343999-73344012 chr15:73343713-73343723 chr15:73345747-73345760
3	NRF1	chr15:73343440-73345937	SK-N-SH	brain:	n/a	chr15:73343975-73343984 chr15:73344378-73344387 chr15:73344016-73344025 chr15:73344809-73344818
4	HA-E2F1	chr15:73343803-73345284	Hela-S3	cervix:	n/a	chr15:73344806-73344818 chr15:73344722-73344732 chr15:73344368-73344377 chr15:73344809-73344818 chr15:73345202-73345212 chr15:73344374-73344383 chr15:73343975-73343984 chr15:73344405-73344417
5	POLR2A	chr15:73343899-73345494	Raji	blood:	n/a	n/a
6	SIN3A	chr15:73343608-73345927	H1-hESC	embryonic stem cell:	n/a	chr15:73345747-73345760 chr15:73343999-73344012 chr15:73345342-73345355 chr15:73344977-73344990 chr15:73344056-73344067
7	POLR2A	chr15:73343627-73345984	H1-neurons	neurons:	n/a	n/a
8	POLR2A	chr15:73343714-73344061	HepG2	liver:	n/a	n/a
9	MAZ	chr15:73343818-73345211	HepG2	liver:	n/a	chr15:73344252-73344261 chr15:73344369-73344379 chr15:73344072-73344082
10	TAF1	chr15:73343934-73344751	H1-neurons	neurons:	n/a	n/a
11	POLR2A	chr15:73343846-73345097	HepG2	liver:	n/a	n/a
12	CTBP2	chr15:73343836-73344538	H1-hESC	embryonic stem cell:	n/a	n/a
13	TAF1	chr15:73343958-73344610	H1-hESC	embryonic stem cell:	n/a	n/a
14	HA-E2F1	chr15:73343635-73344636	MCF-7	breast:	n/a	chr15:73344368-73344377 chr15:73344374-73344383 chr15:73343975-73343984 chr15:73344405-73344417
15	POLR2A	chr15:73343527-73344578	MCF10A-Er-Src	breast:	n/a	n/a
16	HDAC2	chr15:73343752-73344131	HepG2	liver:	n/a	n/a
17	MXI1	chr15:73342653-73346307	SK-N-SH	brain:	n/a	n/a
18	POLR2A	chr15:73343870-73344612	MCF10A-Er-Src	breast:	n/a	n/a
19	CHD2	chr15:73343807-73345636	Hela-S3	cervix:	n/a	chr15:73344408-73344418 chr15:73344807-73344817
20	REST	chr15:73343793-73343979	Hela-S3	cervix:	n/a	n/a
21	REST	chr15:73343641-73344468	A549	lung:	n/a	chr15:73343999-73344012 chr15:73343713-73343723
22	MAX	chr15:73343776-73345609	Hela-S3	cervix:	n/a	chr15:73344252-73344261 chr15:73344369-73344379 chr15:73344072-73344082
23	POLR2A	chr15:73343832-73344586	HCT-116	colon:	n/a	n/a
24	POLR2A	chr15:73343733-73345193	A549	lung:	n/a	n/a
25	POLR2A	chr15:73343785-73345286	MCF-7	breast:	n/a	n/a
26	ELF1	chr15:73343756-73344596	GM12878	blood:	n/a	n/a
27	JUND	chr15:73343804-73344794	A549	lung:	n/a	chr15:73344430-73344444 chr15:73344514-73344523
28	POLR2A	chr15:73343838-73345124	MCF-7	breast:	n/a	n/a
29	NR2F2	chr15:73343799-73344606	MCF-7	breast:	n/a	n/a
30	SIN3AK20	chr15:73343543-73346163	MCF-7	breast:	n/a	n/a
31	TCF7L2	chr15:73343744-73344484	Hela-S3	cervix:	n/a	n/a
32	NFIC	chr15:73343748-73344401	ECC-1	luminal epithelium:	n/a	n/a
33	RAD21	chr15:73343855-73344639	H1-hESC	embryonic stem cell:	n/a	chr15:73344091-73344104
34	SP1	chr15:73343614-73344739	A549	lung:	n/a	chr15:73344673-73344687 chr15:73344364-73344378 chr15:73344674-73344683 chr15:73344368-73344377 chr15:73344672-73344684 chr15:73344367-73344379 chr15:73344508-73344517 chr15:73344367-73344378 chr15:73344504-73344518 chr15:73344367-73344379 chr15:73344507-73344519 chr15:73344358-73344372
35	POLR2A	chr15:73343799-73344635	A549	lung:	n/a	n/a
36	POLR2A	chr15:73343841-73345265	MCF-7	breast:	n/a	n/a
37	POLR2A	chr15:73343834-73344634	A549	lung:	n/a	n/a
38	POLR2A	chr15:73343773-73345035	Hela-S3	cervix:	n/a	n/a
39	MAX	chr15:73343705-73345139	HepG2	liver:	n/a	chr15:73344252-73344261 chr15:73344369-73344379 chr15:73344072-73344082
40	POLR2A	chr15:73343823-73344151	A549	lung:	n/a	n/a
41	TCF12	chr15:73343490-73344721	A549	lung:	n/a	chr15:73344193-73344200 chr15:73343527-73343534
42	POLR2A	chr15:73343668-73346021	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr15:73343690-73345894	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr15:73343633-73345959	H1-neurons	neurons:	n/a	n/a
45	MAZ	chr15:73343616-73346019	IMR90	lung:	n/a	chr15:73344252-73344261 chr15:73344369-73344379 chr15:73344072-73344082
46	MAZ	chr15:73343883-73345652	Hela-S3	cervix:	n/a	chr15:73344252-73344261 chr15:73344369-73344379 chr15:73344072-73344082
47	POLR2A	chr15:73343805-73345133	A549	lung:	n/a	n/a
48	BACH1	chr15:73343891-73344645	H1-hESC	embryonic stem cell:	n/a	n/a
49	MAX	chr15:73343627-73345871	A549	lung:	n/a	chr15:73344252-73344261 chr15:73344369-73344379 chr15:73344072-73344082
50	TBP	chr15:73343772-73344541	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:73075212..73078087-chr15:73342810..73345457,4	MCF-7	breast:
2	chr15:72765203..72766825-chr15:73342381..73345092,2	MCF-7	breast:
3	chr15:73074691..73078350-chr15:73341676..73346479,5	MCF-7	breast:

Variant related genes	Relation type
NEO1	TF binding region
ENSG00000261423	Chromatin interaction
ENSG00000159322	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000260898	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3438792	chr15:73343424-73346772	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3410525	chr15:73343674-73346347	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3323077	chr15:73343899-73345997	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73343000-73346000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr15:73343200-73344000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:73343200-73345800	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr15:73343200-73346000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr15:73343200-73346000	Active TSS	Brain Anterior Caudate	brain
6	chr15:73343200-73346200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr15:73343200-73346400	Active TSS	H1 Cell Line	embryonic stem cell
8	chr15:73343200-73346400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:73343200-73346400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:73343200-73346600	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr15:73343200-73347600	Active TSS	Colonic Mucosa	Colon
12	chr15:73343400-73344000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr15:73343400-73344000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr15:73343400-73344000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:73343400-73344000	Flanking Active TSS	Liver	Liver
16	chr15:73343400-73344200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:73343400-73345000	Active TSS	Brain Germinal Matrix	brain
18	chr15:73343400-73345400	Active TSS	Duodenum Mucosa	Duodenum
19	chr15:73343400-73345400	Active TSS	Hela-S3	cervix
20	chr15:73343400-73345800	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr15:73343400-73346200	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr15:73343400-73346200	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr15:73343400-73346200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:73343400-73346200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:73343400-73346200	Active TSS	Brain Angular Gyrus	brain
26	chr15:73343400-73346200	Active TSS	Psoas Muscle	Psoas
27	chr15:73343400-73346200	Active TSS	Right Ventricle	heart
28	chr15:73343400-73346400	Active TSS	H9 Cell Line	embryonic stem cell
29	chr15:73343400-73346400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:73343400-73346600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:73343400-73346800	Active TSS	Aorta	Aorta
32	chr15:73343600-73344000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:73343600-73344000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
34	chr15:73343600-73344000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
35	chr15:73343600-73344000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
36	chr15:73343600-73344000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr15:73343600-73344000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:73343600-73344000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:73343600-73344000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
40	chr15:73343600-73344000	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:73343600-73344000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr15:73343600-73344000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:73343600-73344000	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
44	chr15:73343600-73344000	Active TSS	Fetal Heart	heart
45	chr15:73343600-73344000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
46	chr15:73343600-73344000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr15:73343600-73344000	Flanking Active TSS	Dnd41	blood
48	chr15:73343600-73344000	Flanking Active TSS	HMEC	breast
49	chr15:73343600-73344000	Flanking Bivalent TSS/Enh	NH-A	brain
50	chr15:73343600-73344000	Bivalent/Poised TSS	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links