Variant report

Variant	rs368448598
Chromosome Location	chr15:83098608-83098609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr15:83098449-83098821	GM12878	blood:	n/a	chr15:83098637-83098647 chr15:83098518-83098530 chr15:83098519-83098533 chr15:83098694-83098704 chr15:83098519-83098528 chr15:83098564-83098573 chr15:83098520-83098529 chr15:83098668-83098689 chr15:83098694-83098704 chr15:83098563-83098575 chr15:83098518-83098530
2	POLR2A	chr15:83098514-83098870	GM12878	blood:	n/a	n/a
3	POU2F2	chr15:83098536-83098983	GM12878	blood:	n/a	n/a
4	ZBTB33	chr15:83098608-83098871	K562	blood:	n/a	n/a
5	FOSL2	chr15:83098561-83098849	HepG2	liver:	n/a	n/a
6	PAX5	chr15:83098561-83098804	GM12878	blood:	n/a	chr15:83098635-83098654
7	TAF1	chr15:83098468-83099009	H1-hESC	embryonic stem cell:	n/a	n/a
8	EBF1	chr15:83098530-83098919	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:83098574-83098947	H1-hESC	embryonic stem cell:	n/a	n/a
10	TAF1	chr15:83098578-83098944	H1-hESC	embryonic stem cell:	n/a	n/a
11	SP1	chr15:83098467-83098871	GM12878	blood:	n/a	chr15:83098637-83098647 chr15:83098518-83098530 chr15:83098519-83098533 chr15:83098694-83098704 chr15:83098519-83098528 chr15:83098564-83098573 chr15:83098520-83098529 chr15:83098668-83098689 chr15:83098694-83098704 chr15:83098563-83098575 chr15:83098518-83098530
12	SP1	chr15:83098564-83098875	HepG2	liver:	n/a	chr15:83098637-83098647 chr15:83098694-83098704 chr15:83098564-83098573 chr15:83098668-83098689 chr15:83098694-83098704
13	SIX5	chr15:83098577-83098855	K562	blood:	n/a	n/a
14	POLR2A	chr15:83098447-83100037	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr15:83098496-83098890	H1-hESC	embryonic stem cell:	n/a	n/a
16	PAX5	chr15:83098550-83098883	GM12878	blood:	n/a	chr15:83098635-83098654
17	POLR2A	chr15:83098511-83099203	H1-hESC	embryonic stem cell:	n/a	n/a
18	TCF12	chr15:83098573-83098848	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
GOLGA6L20	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820106	chr15:82606410-83202155	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1053566	chr15:82606410-83204498	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1046321	chr15:82680087-83202155	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	esv2758391	chr15:82879646-83310525	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	esv2760046	chr15:82879646-83310525	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv428802	chr15:82879650-83107710	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv833069	chr15:82936700-83159994	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv904447	chr15:82952273-83099227	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv904448	chr15:82952273-83146206	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv3501526	chr15:82953997-83163195	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv3501527	chr15:82953997-83163195	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
14	esv3511106	chr15:82954147-83150695	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
15	esv3511107	chr15:82954147-83150695	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
16	esv3312434	chr15:82954397-83162595	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
17	esv3312435	chr15:82954397-83162595	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
18	esv1823691	chr15:82957249-83126316	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
19	esv3485636	chr15:82957847-83162945	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
20	esv3485637	chr15:82957847-83162945	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
21	nsv482552	chr15:82970501-83140071	Active TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
22	esv3521494	chr15:83038997-83162795	Inactive region	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
23	esv3521495	chr15:83038997-83162795	Inactive region	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv428645	chr15:83069951-83227151	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv984102	chr15:83073184-83201789	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
26	esv1796185	chr15:83074652-83112591	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
27	nsv469699	chr15:83088908-83207713	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
28	nsv471686	chr15:83088909-83207713	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
29	esv10828	chr15:83096440-83219640	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
30	esv3439203	chr15:83097322-83099870	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
31	nsv9286	chr15:83097712-83186023	Enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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