Variant report

Variant	rs368564939
Chromosome Location	chr9:71962346-71962347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71938497..71941433-chr9:71956762..71962911,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-APBA1-5	chr9:71962248-71962478	ucscGeneNc_uc004aho_1

Variant related genes	Relation type
ENSG00000135063	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv893428	chr9:71926658-72027641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv893429	chr9:71961923-72047337	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71955400-71981800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:71961200-71963000	Enhancers	Fetal Heart	heart
3	chr9:71961600-71962400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:71961600-71962400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:71961600-71962400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:71961600-71962400	Enhancers	Right Atrium	heart
7	chr9:71961600-71962400	Enhancers	Right Ventricle	heart
8	chr9:71961600-71962600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:71961600-71962600	Enhancers	NHEK	skin
10	chr9:71961600-71963200	Enhancers	HUVEC	blood vessel
11	chr9:71961800-71962400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:71961800-71962400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:71961800-71962400	Enhancers	Left Ventricle	heart
14	chr9:71961800-71962400	Enhancers	HMEC	breast
15	chr9:71961800-71963000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:71962000-71962400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:71962000-71962400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:71962000-71962400	Enhancers	Esophagus	oesophagus
19	chr9:71962000-71962400	Enhancers	Placenta	Placenta
20	chr9:71962000-71962400	Enhancers	Gastric	stomach
21	chr9:71962000-71962400	Enhancers	Lung	lung
22	chr9:71962000-71962600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:71962000-71962600	Enhancers	Pancreas	Pancrea
24	chr9:71962000-71962600	Enhancers	Psoas Muscle	Psoas
25	chr9:71962000-71963000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr9:71962000-71963200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:71962000-71963200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:71962200-71962400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:71962200-71962600	Enhancers	Placenta Amnion	Placenta Amnion
30	chr9:71962200-71963200	Enhancers	Fetal Lung	lung
31	chr9:71962200-71963200	Enhancers	Ovary	ovary
32	chr9:71962200-71994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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