Variant report

Variant	rs368600274
Chromosome Location	chr3:101682624-101682625
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101681933..101682716-chr3:122473612..122474290,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv877224	chr3:101675949-101755738	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv877225	chr3:101681481-101739073	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877226	chr3:101681481-101803052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101681200-101684200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:101681400-101682800	Weak transcription	HSMMtube	muscle
3	chr3:101681600-101682800	Weak transcription	NHLF	lung
4	chr3:101681600-101683000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:101681800-101682800	Weak transcription	NH-A	brain
6	chr3:101682000-101684200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:101682200-101683600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:101682200-101684000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:101682200-101684000	Enhancers	NHDF-Ad	bronchial
10	chr3:101682200-101684800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:101682400-101683400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:101682400-101683800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:101682400-101683800	Enhancers	Osteobl	bone
14	chr3:101682400-101684000	Enhancers	HMEC	breast
15	chr3:101682400-101684200	Enhancers	NHEK	skin
16	chr3:101682600-101682800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr3:101682600-101683400	Enhancers	HSMM	muscle
18	chr3:101682600-101683400	Enhancers	HUVEC	blood vessel
19	chr3:101682600-101683600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:101682600-101683600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:101682600-101683600	Enhancers	Hela-S3	cervix
22	chr3:101682600-101683800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:101682600-101684000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:101682600-101685800	Enhancers	Primary monocytes fromperipheralblood	blood

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