Variant report

Variant	rs368710989
Chromosome Location	chr3:157210737-157210738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:157210603-157213396	SK-N-SH	brain:	n/a	chr3:157211607-157211626 chr3:157211617-157211624

No.	Distal block	Cell Line	Cell type
1	chr3:157206521..157208283-chr3:157210267..157212147,2	K562	blood:
2	chr3:157001018..157003742-chr3:157209899..157211507,2	K562	blood:
3	chr3:157191374..157193760-chr3:157210330..157212227,2	K562	blood:
4	chr3:156877680..156879425-chr3:157209675..157211718,2	MCF-7	breast:
5	chr3:157205290..157208283-chr3:157209694..157212147,2	K562	blood:

Variant related genes	Relation type
VEPH1	TF binding region
ENSG00000163660	Chromatin interaction
ENSG00000197415	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv963284	chr3:157209628-157210772	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157185600-157211400	Weak transcription	HSMM	muscle
2	chr3:157194000-157212000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:157194600-157217000	Weak transcription	Pancreas	Pancrea
4	chr3:157194800-157212000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:157199000-157211600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:157206200-157211200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:157206200-157211200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:157206600-157211800	Weak transcription	NHLF	lung
9	chr3:157206800-157211200	Weak transcription	NHDF-Ad	bronchial
10	chr3:157207000-157211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:157207200-157211400	Weak transcription	Fetal Kidney	kidney
12	chr3:157207400-157211000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:157209000-157211000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:157209000-157211400	Strong transcription	HUVEC	blood vessel
15	chr3:157210000-157212400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:157210200-157210800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:157210200-157214000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:157210400-157211000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:157210400-157211000	Weak transcription	NH-A	brain
20	chr3:157210400-157212800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr3:157210600-157211000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:157210600-157211200	Weak transcription	Osteobl	bone
23	chr3:157210600-157214000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:157210600-157217000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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