Variant report

Variant	rs368777304
Chromosome Location	chr6:20216610-20216611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:20214474..20216698-chr6:20404358..20407296,3	K562	blood:
2	chr6:20211598..20216001-chr6:20216238..20220136,10	K562	blood:
3	chr6:20215918..20219378-chr6:20401289..20404111,5	K562	blood:

Variant related genes	Relation type
ENSG00000227803	Chromatin interaction
ENSG00000112242	Chromatin interaction
ENSG00000172197	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029729	chr6:20113226-20235122	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538155	chr6:20113226-20235122	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1027355	chr6:20207893-20261048	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1027220	chr6:20213667-20258103	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1028657	chr6:20215081-20258103	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:20213400-20217600	Weak transcription	Lung	lung
2	chr6:20213600-20217600	Weak transcription	Brain Anterior Caudate	brain
3	chr6:20213800-20217600	Weak transcription	Ovary	ovary
4	chr6:20213800-20217600	Weak transcription	Right Ventricle	heart
5	chr6:20214000-20216800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:20214000-20216800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:20214000-20217000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:20214000-20217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:20214000-20217000	Weak transcription	NHLF	lung
10	chr6:20214000-20217200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:20214000-20217200	Weak transcription	Right Atrium	heart
12	chr6:20214000-20217400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:20214000-20217400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:20214000-20217600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:20214000-20217600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:20214000-20217600	Weak transcription	Brain Substantia Nigra	brain
17	chr6:20214000-20217600	Enhancers	Fetal Heart	heart
18	chr6:20214000-20217800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:20214000-20217800	Weak transcription	Pancreas	Pancrea
20	chr6:20214200-20216800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:20214200-20216800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:20214200-20216800	Weak transcription	NHDF-Ad	bronchial
23	chr6:20214200-20217000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:20214200-20217000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:20214200-20217000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:20214200-20217000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:20214200-20217000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:20214200-20217000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:20214200-20217000	Weak transcription	Stomach Mucosa	stomach
30	chr6:20214200-20217000	Weak transcription	NHEK	skin
31	chr6:20214200-20217600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:20214200-20217600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:20214200-20217600	Weak transcription	Adipose Nuclei	Adipose
34	chr6:20214200-20217600	Weak transcription	Brain Hippocampus Middle	brain
35	chr6:20214200-20217600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr6:20214200-20217600	Weak transcription	HMEC	breast
37	chr6:20214200-20217800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:20214200-20217800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:20214200-20218000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:20214200-20221600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:20214800-20217600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:20215200-20217600	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:20216600-20217200	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr6:20216600-20218200	Enhancers	Fetal Intestine Large	intestine
45	chr6:20216600-20218400	Enhancers	Left Ventricle	heart
46	chr6:20216600-20218400	Enhancers	K562	blood

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