Variant report

Variant	rs368887836
Chromosome Location	chr3:49641778-49641779
allele	-/CT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv3324697	chr3:49641773-49644321	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49637800-49653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:49638000-49644600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:49638000-49647200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:49639200-49643800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:49639800-49644000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:49639800-49644000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:49639800-49644600	Weak transcription	NHDF-Ad	bronchial
8	chr3:49640200-49641800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:49640200-49642000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:49640400-49646800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:49640600-49644000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:49640600-49644200	Weak transcription	Hela-S3	cervix
13	chr3:49640600-49644800	Weak transcription	Brain Angular Gyrus	brain
14	chr3:49640600-49647000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:49640800-49646800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:49641000-49643800	Weak transcription	Spleen	Spleen
17	chr3:49641000-49644000	Weak transcription	Pancreas	Pancrea
18	chr3:49641000-49644600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:49641200-49644400	Weak transcription	HMEC	breast
20	chr3:49641200-49644400	Weak transcription	NHEK	skin
21	chr3:49641200-49644600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:49641200-49653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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