Variant report

Variant	rs368911372
Chromosome Location	chr2:128196825-128196826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv519035	chr2:128195244-128210400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv524607	chr2:128196424-128218364	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128181400-128209800	Weak transcription	Right Atrium	heart
2	chr2:128181600-128197200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:128183000-128197000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:128194600-128197200	Enhancers	Gastric	stomach
5	chr2:128195200-128197000	Enhancers	Stomach Mucosa	stomach
6	chr2:128195200-128197400	Enhancers	Pancreas	Pancrea
7	chr2:128195800-128197400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:128196000-128197000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:128196200-128211600	Weak transcription	Colonic Mucosa	Colon
10	chr2:128196600-128197600	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr2:128196600-128198400	Enhancers	HepG2	liver
12	chr2:128196800-128197200	Weak transcription	Liver	Liver
13	chr2:128196800-128197400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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