Variant report

Variant	rs369067747
Chromosome Location	chr1:179198003-179198004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179189295..179193775-chr1:179196197..179201101,5	K562	blood:
2	chr1:179188852..179191101-chr1:179195980..179198204,2	K562	blood:
3	chr1:179188599..179190144-chr1:179197953..179200570,2	MCF-7	breast:
4	chr1:179059594..179062253-chr1:179196494..179198412,2	MCF-7	breast:
5	chr1:179181952..179183733-chr1:179196308..179198150,2	K562	blood:
6	chr1:179187242..179191261-chr1:179196503..179201085,5	MCF-7	breast:
7	chr1:179194698..179198189-chr1:179199454..179203395,4	K562	blood:

Variant related genes	Relation type
ENSG00000225711	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3441716	chr1:179197554-179200302	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179197400-179198200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:179197400-179198200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:179197400-179198200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
4	chr1:179197400-179199000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:179197400-179199400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:179197600-179198200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr1:179197600-179198200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr1:179197600-179198200	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr1:179197600-179198200	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr1:179197600-179198200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr1:179197600-179198200	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr1:179197600-179198200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:179197600-179198200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr1:179197600-179198200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr1:179197600-179198200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr1:179197600-179198200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:179197600-179198200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr1:179197600-179198200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr1:179197600-179198200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:179197600-179198200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:179197600-179198200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr1:179197600-179198200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:179197600-179198200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:179197600-179198200	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr1:179197600-179198200	Flanking Active TSS	Liver	Liver
26	chr1:179197600-179198200	Flanking Active TSS	Brain Angular Gyrus	brain
27	chr1:179197600-179198200	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr1:179197600-179198200	Flanking Active TSS	Brain Germinal Matrix	brain
29	chr1:179197600-179198200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:179197600-179198200	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr1:179197600-179198200	Flanking Active TSS	Fetal Intestine Small	intestine
32	chr1:179197600-179198200	Flanking Active TSS	Fetal Lung	lung
33	chr1:179197600-179198200	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr1:179197600-179198200	Flanking Active TSS	Fetal Thymus	thymus
35	chr1:179197600-179198200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr1:179197600-179198200	Flanking Active TSS	Rectal Smooth Muscle	rectum
37	chr1:179197600-179198200	Flanking Active TSS	Right Ventricle	heart
38	chr1:179197600-179198200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr1:179197600-179198200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr1:179197600-179198200	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr1:179197600-179198200	Flanking Active TSS	Dnd41	blood
42	chr1:179197600-179198200	Flanking Active TSS	GM12878-XiMat	blood
43	chr1:179197600-179198200	Flanking Active TSS	HSMM	muscle
44	chr1:179197600-179198200	Flanking Active TSS	HSMMtube	muscle
45	chr1:179197600-179198200	Flanking Active TSS	HUVEC	blood vessel
46	chr1:179197600-179198200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr1:179197600-179198200	Flanking Active TSS	NH-A	brain
48	chr1:179197600-179198200	Flanking Active TSS	NHEK	skin
49	chr1:179197600-179199000	Active TSS	Colonic Mucosa	Colon
50	chr1:179197600-179199000	Active TSS	Fetal Muscle Trunk	muscle

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