Variant report

Variant	rs369096840
Chromosome Location	chr10:43329286-43329287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:43328782-43329438	K562	blood:	n/a	n/a

Variant related genes	Relation type
RNU6-885P	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
12	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
13	esv14695	chr10:43301539-43355457	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv8627	chr10:43324929-43354934	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases
15	esv13569	chr10:43325598-43331203	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases
16	esv1846370	chr10:43327115-43330365	Strong transcription Weak transcription Enhancers	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases
17	esv1851953	chr10:43327115-43330365	Strong transcription Weak transcription Enhancers	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases
18	esv1842859	chr10:43327115-43334095	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases
19	esv1844039	chr10:43327844-43330365	Weak transcription Strong transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
20	esv32721	chr10:43328713-43330061	Weak transcription Enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43293200-43332400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:43303600-43332200	Weak transcription	NHDF-Ad	bronchial
3	chr10:43309800-43330000	Weak transcription	Small Intestine	intestine
4	chr10:43314400-43332200	Weak transcription	Right Atrium	heart
5	chr10:43314600-43329800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr10:43320000-43332600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:43321400-43332800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:43321600-43332200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:43323000-43332400	Weak transcription	Psoas Muscle	Psoas
10	chr10:43323400-43332200	Weak transcription	Stomach Mucosa	stomach
11	chr10:43324000-43331600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:43325000-43329400	Strong transcription	Dnd41	blood
13	chr10:43325800-43329400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:43326200-43329400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:43326400-43329800	Weak transcription	HSMMtube	muscle
16	chr10:43326400-43332200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:43326600-43329800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:43326600-43330000	Weak transcription	K562	blood
19	chr10:43326600-43331400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:43326800-43330000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:43326800-43331000	Weak transcription	Fetal Brain Male	brain
22	chr10:43326800-43331400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:43326800-43331600	Weak transcription	Aorta	Aorta
24	chr10:43326800-43331600	Weak transcription	Fetal Intestine Small	intestine
25	chr10:43326800-43331800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:43326800-43332000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:43326800-43332200	Weak transcription	Brain Anterior Caudate	brain
28	chr10:43326800-43332200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:43326800-43332200	Weak transcription	NHEK	skin
30	chr10:43326800-43332400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:43327000-43329600	Weak transcription	GM12878-XiMat	blood
32	chr10:43327000-43332000	Weak transcription	Colonic Mucosa	Colon
33	chr10:43327200-43332000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:43327200-43332200	Weak transcription	NH-A	brain
35	chr10:43327200-43332600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:43327200-43332800	Weak transcription	Spleen	Spleen
37	chr10:43327400-43331200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr10:43327400-43331400	Weak transcription	Brain Germinal Matrix	brain
39	chr10:43327400-43332200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:43327400-43332200	Weak transcription	Fetal Kidney	kidney
41	chr10:43327400-43332200	Weak transcription	HepG2	liver
42	chr10:43327400-43332200	Weak transcription	NHLF	lung
43	chr10:43327600-43330200	Weak transcription	Fetal Lung	lung
44	chr10:43327600-43331400	Weak transcription	Osteobl	bone
45	chr10:43327600-43331600	Weak transcription	HUVEC	blood vessel
46	chr10:43327600-43331800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr10:43327600-43332200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:43327600-43332200	Weak transcription	Primary B cells from peripheral blood	blood
49	chr10:43327600-43332200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:43327600-43332200	Weak transcription	Colon Smooth Muscle	Colon

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